BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0578400 Os02g0578400|Os02g0578400
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14150.1 | chr1:4839885-4840632 FORWARD LENGTH=191 173 8e-44
AT4G21280.2 | chr4:11334446-11335587 FORWARD LENGTH=225 55 2e-08
AT4G05180.1 | chr4:2672093-2673170 REVERSE LENGTH=231 53 1e-07
>AT1G14150.1 | chr1:4839885-4840632 FORWARD LENGTH=191
Length = 190
Score = 173 bits (438), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 101/118 (85%)
Query: 108 SYVRERFFEPGLTAEEAAARIRQTAEGMRTLRPMLETMSWKYVLFYVRLKSKYLDLDLTT 167
S+++E++F PGL+ E+AAARI+QTAEG+R +R ML+ MSW+YV+FY+RLK YL DLT
Sbjct: 73 SFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTN 132
Query: 168 AMFGVPEARRADYVRVANELVDNMTEFDRFVRTPKVYESYLYYEKTLKSLDDVTEFLA 225
AM +PE+RR DYV+ ANELV+NM+E D +VRTPKVYESYLYYEKTLKS+D+V EFLA
Sbjct: 133 AMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190
>AT4G21280.2 | chr4:11334446-11335587 FORWARD LENGTH=225
Length = 224
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%)
Query: 110 VRERFFEPGLTAEEAAARIRQTAEGMRTLRPMLETMSWKYVLFYVRLKSKYLDLDLTTAM 169
+++RF+ L EAAAR +++A+ + ++P+++ +W YV +R K+ YL DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168
Query: 170 FGVPEARRADYVRVANELVDNMTEFDRFVRTPKVYESYLYYEKTLKSLDDV 220
P+ + + +L D + D + ++ YY +T+ +L++V
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEV 219
>AT4G05180.1 | chr4:2672093-2673170 REVERSE LENGTH=231
Length = 230
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 110 VRERFFEPGLTAEEAAARIRQTAEGMRTLRPMLETMSWKYVLFYVRLKSKYLDLDLTTAM 169
+++RF+ L+ EAAAR + +A+ + ++ ++ +W YV +RL++ YL DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174
Query: 170 FGVPEARRADYVRVANELVDNMTEFDRFVRTPKVYESYLYYEKTLKSLDDV 220
P+ + + +L + D R+ ++ YY +T+ SL++V
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNV 225
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,370,082
Number of extensions: 74829
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)