Os02g0573300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-sugar transporter family protein.
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Os02g0573300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-sugar transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.25 | 0.254 | 10.2 | -0.738 | 0.255 | 0.555 | 0.0945 | -1.08 | -0.456 | 14.3 | 17.11 | 11 | -- | -- |
| 30.01 | 0.255 | 10.1 | -0.565 | 0.256 | 0.581 | -0.238 | -- | -0.408 | 14.1 | 15.4 | 17 | -- | -- |
| 29.28 | 0.252 | 10.2 | -0.722 | 0.254 | 0.556 | -- | -0.993 | -0.451 | 14.2 | 17.11 | 11 | -- | -- |
| 30.21 | 0.256 | 10.2 | -0.57 | 0.256 | 0.573 | -- | -- | -0.408 | 14.1 | 15.29 | 19 | -- | -- |
| 31.8 | 0.263 | 10.2 | -0.79 | -- | 0.804 | -- | -0.994 | -0.5 | -- | 17.67 | 13 | -- | -- |
| 33.49 | 0.271 | 10.1 | -0.45 | 0.426 | -- | -0.144 | -- | -0.323 | 14.2 | -- | -- | -- | -- |
| 33.57 | 0.271 | 10.1 | -0.455 | 0.426 | -- | -- | -- | -0.324 | 14.2 | -- | -- | -- | -- |
| 32.77 | 0.267 | 10.2 | -0.631 | -- | 0.805 | -- | -- | -0.458 | -- | 16.8 | 11 | -- | -- |
| 37.94 | 0.288 | 10.1 | -- | 0.342 | 0.283 | -- | -- | -0.312 | 14.3 | 17.18 | 19 | -- | -- |
| 44.34 | 0.311 | 10.1 | -0.472 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 39.02 | 0.292 | 10.1 | -- | 0.434 | -- | -- | -- | -0.273 | 14.3 | -- | -- | -- | -- |
| 42.63 | 0.304 | 10.1 | -- | -- | 0.588 | -- | -- | -0.362 | -- | 18.5 | 7 | -- | -- |
| 50.23 | 0.331 | 10.1 | -- | -- | -- | -- | -- | -0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.86 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 27.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 28.32 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 21 |
| 10 | 28.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 20 | 28.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 21 | 28.60 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 23 | 28.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 30 | 28.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 38 | 28.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 50 | 28.86 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 52 | 28.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 64 | 28.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 85 | 29.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 99 | 29.09 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 14 |
| 100 | 29.09 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 111 | 29.15 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 126 | 29.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 152 | 29.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 153 | 29.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 158 | 29.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 162 | 29.31 | humidity | 90 | 90 | > th | dose dependent | sin | 1 | NA |
| 163 | 29.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 165 | 29.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 179 | 29.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 186 | 29.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 195 | 29.38 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 209 | 29.40 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 10 |
| 213 | 29.40 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 230 | 29.43 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 242 | 29.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 251 | 29.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 261 | 29.47 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 266 | 29.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 276 | 29.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 281 | 29.50 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 297 | 29.53 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 6 |
| 321 | 29.55 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 328 | 29.56 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 22 |
| 337 | 29.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 364 | 29.59 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 368 | 29.59 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 389 | 29.60 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 9 |
| 406 | 29.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 409 | 29.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 431 | 29.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 438 | 29.64 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 496 | 29.67 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 523 | 29.68 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 543 | 29.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 565 | 29.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 569 | 29.71 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 582 | 29.72 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 4 |
| 600 | 29.73 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 16 |
| 601 | 29.73 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 18 |
| 602 | 29.73 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 631 | 29.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 660 | 29.77 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 663 | 29.77 | humidity | 90 | 10 | > th | dose independent | rect. | 4 | 8 |
| 665 | 29.77 | humidity | 90 | 10 | > th | dose independent | rect. | 4 | 14 |
| 670 | 29.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 683 | 29.78 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 747 | 29.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 776 | 29.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 834 | 29.84 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 902 | 29.86 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 918 | 29.87 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 3 | NA |
| 920 | 29.87 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 3 | NA |
| 928 | 29.87 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 12 |
| 934 | 29.87 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 984 | 29.88 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 22 | 16 |