BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0573300 Os02g0573300|AK066007
         (209 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65000.1  | chr5:25965123-25967307 REVERSE LENGTH=326          240   5e-64

>AT5G65000.1 | chr5:25965123-25967307 REVERSE LENGTH=326
          Length = 325

 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 137/193 (70%)

Query: 17  RQKQSPKQIFXXXXXXXXXXXXXXXXXXXXXXXXXXXDYILLYGIIPVTXXXXXXXXXXX 76
           RQKQS  QI                            D  L YGIIPV            
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191

Query: 77  XCQWASQVKKHTSYMMTIEMSFIGSMCLLASTSQSPDGEAIRKHGFFHEWTLLTVVPVLM 136
            CQWASQVKKH+SY+MT+EMS +GS+CLL ST +SPDGEAI+K+GFFH WT LT+VPV+ 
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251

Query: 137 NAVGGILVGLVTTYAGGVRKGFVIVSALLVTALLQFIFDGKPPSLYCLIALPLVMTSIFI 196
           NA+GGILVGLVT++AGGVRKGFVIVSALLVTALLQF F+GKPPS YCL+ALPLVM+SI +
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311

Query: 197 YQKYPYVDRKKKD 209
           YQKYPY+D+KKK 
Sbjct: 312 YQKYPYIDKKKKK 324



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,609,928
Number of extensions: 113933
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)