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Os02g0573200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cryptochrome 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0203) R2 : 0.308
β1 : 0.958 (0.0743) R2dD : 0.262 R2D : 0.164
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.364 (0.0433) R2dN8 : 0.143 R2N8 : 0.0462
σ : 0.381
deviance : 66.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.56 0.296 13.5 1.1 0.738 0.618 0.12 -2.62 0.34 3.64 1.1 52 -- --
43.54 0.307 13.5 1.04 0.671 0.342 0.418 -- 0.321 3.37 1.2 51 -- --
39.6 0.293 13.5 1.09 0.738 0.618 -- -2.68 0.34 3.64 1.1 51 -- --
43.59 0.307 13.5 1 0.728 0.28 -- -- 0.341 3.53 1.459 53 -- --
63.97 0.373 13.4 1.03 -- 0.131 -- -2.67 0.383 -- 1 78 -- --
45.28 0.315 13.5 0.938 0.608 -- 0.317 -- 0.35 3.41 -- -- -- --
45.6 0.316 13.5 0.933 0.609 -- -- -- 0.348 3.39 -- -- -- --
55 0.345 13.5 0.904 -- -0.392 -- -- 0.362 -- 3.8 55 -- --
67.7 0.383 13.5 -- 0.583 -0.263 -- -- 0.235 2.87 2.536e-06 350 -- --
66.46 0.381 13.5 0.958 -- -- -- -- 0.364 -- -- -- -- --
68.52 0.387 13.5 -- 0.627 -- -- -- 0.244 3.39 -- -- -- --
71.96 0.395 13.5 -- -- -0.538 -- -- 0.264 -- 3.839 57 -- --
90.68 0.444 13.5 -- -- -- -- -- 0.258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.45 wind 1.0 270 < th dose independent rect. 23 2
2 36.72 wind 1.0 270 < th dose dependent rect. 24 1
6 37.76 temperature 20.0 270 > th dose independent rect. 24 2
7 37.90 temperature 30.0 90 < th dose dependent rect. 17 7
8 37.91 temperature 20.0 270 > th dose independent rect. 22 6
9 37.95 temperature 10.0 270 > th dose dependent rect. 11 16
10 37.97 temperature 30.0 10 < th dose dependent rect. 18 7
11 38.02 temperature 20.0 90 > th dose independent rect. 24 6
13 38.09 temperature 20.0 270 > th dose independent rect. 23 4
20 38.14 temperature 30.0 90 < th dose dependent rect. 15 9
42 38.37 temperature 25.0 30 < th dose independent rect. 18 7
44 38.38 temperature 20.0 10 > th dose independent rect. 1 5
61 38.56 temperature 20.0 90 > th dose independent rect. 13 16
66 38.59 radiation 1.0 90 < th dose dependent rect. 14 10
74 38.65 temperature 15.0 90 > th dose dependent rect. 13 16
75 38.66 temperature 20.0 10 > th dose independent rect. 1 3
80 38.69 temperature 20.0 10 > th dose independent rect. 13 17
83 38.71 radiation 1.0 90 < th dose independent rect. 14 10
94 38.77 temperature 25.0 90 < th dose independent rect. 15 9
112 38.85 humidity 80.0 90 > th dose dependent rect. 24 5
125 38.92 wind 1.0 270 < th dose independent rect. 11 15
129 38.94 atmosphere 1015.0 270 < th dose dependent rect. 1 1
130 38.94 humidity 70.0 270 > th dose dependent rect. 24 2
134 38.96 wind 1.0 90 < th dose independent rect. 23 6
135 38.96 atmosphere 1010.0 270 < th dose independent rect. 11 17
137 38.96 atmosphere 1015.0 90 < th dose dependent rect. 24 5
159 39.02 temperature 30.0 10 < th dose dependent rect. 12 13
167 39.06 wind 1.0 270 < th dose independent rect. 16 10
195 39.12 wind 1.0 270 > th dose independent rect. 3 21
204 39.14 temperature 15.0 10 > th dose dependent rect. 13 17
255 39.25 radiation 40.0 270 < th dose dependent rect. 14 10
259 39.26 humidity 80.0 30 > th dose dependent rect. 24 7
282 39.32 radiation 1.0 1440 > th dose independent rect. 11 1
297 39.34 humidity 50.0 90 > th dose dependent rect. 17 7
319 39.38 radiation 40.0 30 < th dose dependent rect. 10 15
339 39.42 temperature 25.0 90 < th dose independent rect. 24 5
340 39.42 humidity 60.0 90 > th dose independent rect. 17 7
343 39.42 wind 1.0 30 > th dose independent rect. 4 21
349 39.43 radiation 1.0 270 < th dose independent rect. 4 20
359 39.44 temperature 10.0 90 > th dose dependent rect. 24 6
362 39.45 temperature 25.0 90 < th dose independent rect. 24 7
381 39.48 wind 1.0 90 < th dose independent rect. 11 18
383 39.48 radiation 10.0 90 < th dose dependent rect. 24 6
385 39.49 radiation 30.0 270 < th dose independent rect. 14 10
389 39.50 radiation 10.0 90 < th dose independent rect. 24 6
410 39.53 wind 1.0 90 < th dose independent rect. 15 14
446 39.57 humidity 50.0 10 > th dose dependent rect. 17 8
449 39.58 temperature 10.0 270 > th dose dependent rect. 24 2
473 39.62 humidity 90.0 30 > th dose independent rect. 1 4
474 39.62 atmosphere 1010.0 90 < th dose independent rect. 24 6
481 39.63 precipitation 0.1 270 < th dose independent rect. 1 1
483 39.63 atmosphere 1010.0 270 < th dose independent rect. 22 7
485 39.63 precipitation 0.1 270 < th dose dependent rect. 1 1
491 39.64 temperature 10.0 90 > th dose independent rect. 24 6
495 39.64 humidity 50.0 90 > th dose independent rect. 24 6
498 39.64 atmosphere 995.0 90 > th dose independent rect. 24 6
504 39.64 temperature 10.0 90 > th dose independent rect. 6 18
510 39.64 radiation 40.0 270 < th dose dependent rect. 4 20
512 39.65 wind 9.0 90 < th dose independent rect. 24 6
515 39.65 wind 9.0 90 < th dose independent rect. 6 18
516 39.65 wind 3.0 90 < th dose dependent rect. 24 5
518 39.66 wind 1.0 90 < th dose independent sin 14 NA
521 39.66 radiation 10.0 90 < th dose dependent rect. 24 10
535 39.68 precipitation 0.1 270 < th dose independent rect. 24 3
541 39.68 precipitation 0.1 270 < th dose dependent rect. 24 3
545 39.69 atmosphere 1015.0 270 < th dose independent rect. 24 15
546 39.69 precipitation 0.1 270 < th dose independent rect. 24 15
548 39.69 humidity 50.0 90 > th dose independent rect. 5 19
550 39.69 precipitation 0.1 270 < th dose dependent rect. 24 15
551 39.70 temperature 10.0 270 > th dose independent rect. 1 1
553 39.70 temperature 30.0 270 < th dose independent rect. 1 1
554 39.70 humidity 50.0 270 > th dose independent rect. 1 1
557 39.70 atmosphere 995.0 270 > th dose independent rect. 1 1
558 39.70 atmosphere 1010.0 270 < th dose independent rect. 1 1
560 39.70 radiation 1.0 270 < th dose independent rect. 1 1
566 39.70 temperature 10.0 270 > th dose independent rect. 15 9
569 39.70 temperature 10.0 270 > th dose independent rect. 24 15
571 39.70 precipitation 0.1 90 < th dose independent rect. 6 18
573 39.70 temperature 10.0 270 > th dose independent rect. 2 23
574 39.70 radiation 1.0 270 < th dose dependent rect. 1 1
583 39.70 humidity 50.0 90 > th dose dependent rect. 15 9
585 39.70 precipitation 0.1 90 < th dose dependent rect. 6 18
586 39.71 atmosphere 1010.0 270 < th dose independent rect. 24 3
595 39.72 wind 9.0 270 < th dose independent rect. 1 1
597 39.72 temperature 10.0 270 > th dose independent rect. 24 3
599 39.72 temperature 30.0 270 < th dose independent rect. 24 3
600 39.72 humidity 50.0 270 > th dose independent rect. 24 3
605 39.72 radiation 1.0 270 < th dose independent rect. 24 3
610 39.72 atmosphere 995.0 90 > th dose independent rect. 18 6
611 39.72 wind 9.0 270 < th dose independent rect. 15 9
615 39.72 atmosphere 1015.0 90 < th dose independent rect. 24 18
617 39.72 wind 1.0 90 < th dose independent rect. 9 20
618 39.72 temperature 10.0 270 > th dose independent rect. 3 21
620 39.72 radiation 1.0 270 < th dose dependent rect. 24 3
635 39.73 wind 9.0 270 < th dose independent rect. 24 3
636 39.73 temperature 10.0 90 > th dose independent rect. 18 6
639 39.73 radiation 20.0 90 < th dose independent rect. 18 6
642 39.73 precipitation 0.1 90 < th dose independent rect. 24 6
644 39.73 temperature 10.0 90 > th dose independent rect. 24 18
649 39.73 precipitation 0.1 90 < th dose dependent rect. 24 6
671 39.75 temperature 25.0 270 < th dose independent rect. 19 2
683 39.75 wind 9.0 90 < th dose independent rect. 18 6
702 39.76 wind 9.0 270 < th dose independent rect. 24 15
703 39.76 atmosphere 995.0 270 > th dose independent rect. 24 15
711 39.76 humidity 50.0 90 > th dose dependent rect. 6 18
722 39.77 atmosphere 995.0 90 > th dose independent rect. 6 18
747 39.79 precipitation 0.1 90 < th dose independent rect. 18 6
749 39.79 wind 9.0 90 < th dose independent rect. 24 18
751 39.79 wind 9.0 270 < th dose independent rect. 3 21
752 39.79 temperature 30.0 270 < th dose dependent rect. 19 2
759 39.79 precipitation 0.1 90 < th dose dependent rect. 18 6
770 39.80 radiation 30.0 270 < th dose independent rect. 4 20
771 39.80 precipitation 0.1 270 < th dose independent rect. 3 21
775 39.80 temperature 15.0 270 > th dose dependent rect. 22 6
782 39.80 radiation 40.0 90 < th dose dependent rect. 7 17
786 39.80 precipitation 0.1 270 < th dose dependent rect. 3 21
792 39.81 wind 1.0 90 > th dose independent rect. 18 17
796 39.81 temperature 10.0 30 > th dose dependent rect. 11 23
830 39.84 precipitation 0.1 90 < th dose independent rect. 24 18
831 39.84 radiation 20.0 10 < th dose dependent rect. 1 6
834 39.84 precipitation 0.1 90 < th dose dependent rect. 24 18
852 39.87 humidity 50.0 270 > th dose independent rect. 15 9
855 39.87 temperature 30.0 90 < th dose dependent rect. 21 3
867 39.88 temperature 30.0 90 < th dose independent rect. 5 19
868 39.88 temperature 10.0 10 > th dose dependent rect. 1 5
886 39.89 radiation 10.0 90 < th dose dependent rect. 24 13
890 39.90 radiation 1.0 90 < th dose independent rect. 24 14
921 39.92 wind 9.0 270 < th dose dependent rect. 24 2
946 39.94 radiation 10.0 10 < th dose independent rect. 1 5
968 39.95 wind 9.0 90 < th dose dependent rect. 17 7
979 39.96 wind 9.0 10 < th dose independent rect. 1 5
980 39.96 temperature 10.0 10 > th dose independent rect. 1 5
983 39.96 humidity 50.0 10 > th dose independent rect. 1 5
986 39.96 atmosphere 995.0 10 > th dose independent rect. 1 5
987 39.96 atmosphere 1010.0 10 < th dose independent rect. 1 5
994 39.96 precipitation 0.1 270 < th dose independent rect. 15 9
995 39.96 radiation 1.0 90 < th dose independent rect. 24 10