Os02g0566300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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Os02g0566300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.15 | 0.463 | 5.34 | 0.234 | 1.48 | -0.376 | 0.0569 | 4.69 | 0.199 | 12.1 | 19.33 | 845 | -- | -- |
| 110.9 | 0.494 | 5.46 | -0.766 | 1.68 | -0.623 | -0.625 | -- | -0.0441 | 12.2 | 9.347 | 10259 | -- | -- |
| 97.16 | 0.459 | 5.34 | 0.23 | 1.48 | -0.378 | -- | 4.66 | 0.198 | 12.1 | 19.4 | 844 | -- | -- |
| 112.57 | 0.497 | 5.46 | -0.784 | 1.69 | -0.654 | -- | -- | -0.0426 | 12.3 | 9.458 | 10190 | -- | -- |
| 216.57 | 0.685 | 5.27 | 1.06 | -- | -1.59 | -- | 8.57 | 0.416 | -- | 24.1 | 903 | -- | -- |
| 114.61 | 0.502 | 5.48 | -0.884 | 1.53 | -- | -0.689 | -- | -0.131 | 12 | -- | -- | -- | -- |
| 116.67 | 0.506 | 5.48 | -0.911 | 1.53 | -- | -- | -- | -0.134 | 12 | -- | -- | -- | -- |
| 240.13 | 0.725 | 5.54 | -1.1 | -- | 0.984 | -- | -- | -0.264 | -- | 24.1 | 903 | -- | -- |
| 119.42 | 0.509 | 5.41 | -- | 1.53 | -0.704 | -- | -- | 0.173 | 12 | 9.614 | 41904 | -- | -- |
| 264.87 | 0.76 | 5.51 | -0.959 | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
| 138.54 | 0.551 | 5.46 | -- | 1.55 | -- | -- | -- | -0.0327 | 12.1 | -- | -- | -- | -- |
| 264.02 | 0.757 | 5.43 | -- | -- | -0.834 | -- | -- | 0.191 | -- | 7.367 | 39864 | -- | -- |
| 289.12 | 0.794 | 5.49 | -- | -- | -- | -- | -- | -0.0494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 8 | 94.32 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 11 | 94.62 | temperature | 15 | 720 | > th | dose dependent | sin | 18 | NA |
| 16 | 94.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 21 | 95.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 28 | 95.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 31 | 95.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 33 | 95.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 35 | 95.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 36 | 95.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 48 | 95.65 | temperature | 30 | 270 | < th | dose dependent | sin | 15 | NA |
| 51 | 95.67 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 59 | 95.84 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 17 |
| 61 | 95.87 | humidity | 80 | 43200 | < th | dose independent | sin | 6 | NA |
| 63 | 95.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 64 | 95.87 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 20 |
| 80 | 95.95 | humidity | 50 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 92 | 96.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 102 | 96.03 | humidity | 50 | 43200 | > th | dose dependent | sin | 5 | NA |
| 103 | 96.03 | humidity | 50 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 126 | 96.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 148 | 96.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 149 | 96.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 151 | 96.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 161 | 96.19 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 175 | 96.21 | humidity | 90 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 189 | 96.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 194 | 96.24 | humidity | 50 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 203 | 96.25 | humidity | 90 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 204 | 96.25 | humidity | 50 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 205 | 96.26 | humidity | 60 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 207 | 96.26 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 209 | 96.27 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 220 | 96.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 223 | 96.28 | humidity | 50 | 43200 | > th | dose dependent | no | NA | NA |
| 225 | 96.28 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 239 | 96.29 | humidity | 60 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 276 | 96.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 300 | 96.34 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 330 | 96.37 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 14 |
| 336 | 96.37 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 355 | 96.39 | humidity | 50 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 393 | 96.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 395 | 96.43 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 421 | 96.46 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 430 | 96.47 | humidity | 90 | 43200 | < th | dose dependent | sin | 5 | NA |
| 442 | 96.48 | humidity | 90 | 43200 | < th | dose dependent | sin | 15 | NA |
| 444 | 96.48 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 493 | 96.54 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 542 | 96.59 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 571 | 96.62 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 573 | 96.62 | humidity | 50 | 43200 | > th | dose dependent | sin | 15 | NA |
| 600 | 96.64 | humidity | 90 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 619 | 96.66 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 626 | 96.66 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 661 | 96.70 | humidity | 70 | 43200 | > th | dose independent | sin | 14 | NA |
| 695 | 96.73 | humidity | 90 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 726 | 96.75 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 733 | 96.76 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 773 | 96.79 | humidity | 80 | 43200 | > th | dose independent | sin | 6 | NA |
| 786 | 96.80 | temperature | 20 | 720 | < th | dose independent | sin | 19 | NA |
| 906 | 96.90 | humidity | 90 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 913 | 96.91 | humidity | 70 | 43200 | < th | dose independent | sin | 13 | NA |
| 958 | 96.94 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 962 | 96.94 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |