BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0566300 Os02g0566300|AK073899
         (288 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1  | chr3:2921804-2923258 FORWARD LENGTH=485             57   8e-09
AT1G10000.1  | chr1:3263877-3264788 REVERSE LENGTH=304             52   5e-07

>AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485
          Length = 484

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 109/288 (37%), Gaps = 23/288 (7%)

Query: 7   CKVCGAAEDTWDHALLHCTMSKCVWALMDNDLA--ELIATTNIKDPKDWLFYMLDVLKPG 64
           C  C    ++ +HAL  C  +   W L D+ L   +L++    ++  + L ++ D     
Sbjct: 200 CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTM-S 258

Query: 65  DRTKLLVS--CWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLINIPLCLQDKKHLT 122
           D  KLL     W IW+AR  V+ ++F ESP   +  + +     D +N     Q  K   
Sbjct: 259 DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTV--LSAKAETHDWLN---ATQSHKKTP 313

Query: 123 YPKVPV------WMPPPEDCVKINVDAAISRWGNKGAVGAVCHTVSGEFVAASAMVWEGL 176
            P   +      W  PP   VK N DA       +   G +     G  ++  +M     
Sbjct: 314 SPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHT 373

Query: 177 SDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSISKKPRCQYLAV-LNDIEARRK 235
           S+    E       L        ++V +  DC  +I  I+       LA  L DI     
Sbjct: 374 SNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWAN 433

Query: 236 HFAKVEFRHENQACNFDAHNLAKFA---STLQEGCY---LWFSNPPCN 277
            FA ++F    +  N  AH LAK+    ST   G     +W     CN
Sbjct: 434 KFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCN 481



>AT1G10000.1 | chr1:3263877-3264788 REVERSE LENGTH=304
          Length = 303

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 105/272 (38%), Gaps = 24/272 (8%)

Query: 1   MSTTCICKVCGAAEDTWDHALLHCTMSKCVWALMDNDLAELIATTNIKDPKDWLFYMLDV 60
           +S+T  C  CGA E +  H L HC  +  VW L    L  +   T I +  + L   + +
Sbjct: 27  ISSTWDCARCGAPETS-THMLFHCDFAAQVWNLAPLQLGHIPIGTPILEALNLLKKTIVL 85

Query: 61  LKPGDRTKLLVS--CWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLINIPLCLQDK 118
              G  T  L    CW IW+AR +++   F  S  + +  +   + D       L  Q  
Sbjct: 86  PPVGIHTATLFPWICWHIWKARNQLI---FQNSHFSVIETVTKAVQDA------LAWQSA 136

Query: 119 KHLTYPKVPVWMPPPEDCVKIN------VDAAISRWGNKGAVGAVCHTVS---GEFVAAS 169
           + L  PKV V  P P     +       VDAA  +  +    G V    S    E    S
Sbjct: 137 Q-LALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFS 195

Query: 170 AMVWEGLSDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSI-SKKPRCQYLAVLN 228
           A      S  A  EA      +  A+    S++ + SD   ++ ++ S     +   +L 
Sbjct: 196 AGCRRFPSPLAA-EAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLV 254

Query: 229 DIEARRKHFAKVEFRHENQACNFDAHNLAKFA 260
           +I + R  F  + F+   +  N  A   AK +
Sbjct: 255 EIRSIRNRFRSISFQFIPRLVNSIADAAAKLS 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,811,690
Number of extensions: 274664
Number of successful extensions: 782
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)