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Os02g0557500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U2 auxiliary factor small subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.34 (0.0158) R2 : 0.552
β1 : -0.785 (0.0579) R2dD : 0.188 R2D : 0.177
β2 : 0.791 (0.0406) R2dC : 0.374 R2C : 0.362
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00746 (0.0337) R2dN8 : 6.45e-05 R2N8 : 0.000892
σ : 0.297
deviance : 40.24
__
_____
C
peak time of C : 4.47
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.4 0.283 9.34 -0.75 0.609 -0.43 0.252 -0.385 -0.00634 4.42 76 268 -- --
36.51 0.281 9.34 -0.743 0.616 -0.451 0.354 -- -0.00872 4.4 75.44 270 -- --
36.53 0.281 9.34 -0.756 0.609 -0.424 -- -0.573 -0.00959 4.43 75.95 267 -- --
36.83 0.283 9.34 -0.734 0.607 -0.482 -- -- -0.00576 4.45 75 267 -- --
46.07 0.316 9.34 -0.676 -- -0.939 -- -0.319 0.0324 -- 84.34 276 -- --
39.45 0.294 9.33 -0.781 0.787 -- 0.542 -- 0.0103 4.44 -- -- -- --
40.24 0.297 9.34 -0.785 0.791 -- -- -- 0.00746 4.47 -- -- -- --
45.92 0.316 9.35 -0.696 -- -1.01 -- -- -0.00122 -- 84.28 290 -- --
50.83 0.332 9.33 -- 0.524 -0.634 -- -- 0.0677 4.35 75.67 308 -- --
73.72 0.401 9.34 -0.755 -- -- -- -- 0.0283 -- -- -- -- --
56.5 0.352 9.32 -- 0.776 -- -- -- 0.0949 4.5 -- -- -- --
58.3 0.356 9.33 -- -- -1.08 -- -- 0.0684 -- 81.22 302 -- --
88.74 0.44 9.32 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.82 humidity 70 270 > th dose independent rect. 14 8
3 34.83 humidity 90 270 < th dose dependent rect. 11 6
4 34.89 humidity 80 270 < th dose independent rect. 11 7
7 34.94 radiation 1 270 > th dose independent rect. 9 21
8 34.96 humidity 50 30 > th dose dependent rect. 7 17
12 35.04 humidity 70 10 > th dose independent rect. 18 6
17 35.09 temperature 10 270 > th dose dependent rect. 11 16
19 35.14 humidity 70 30 > th dose independent rect. 14 10
23 35.16 radiation 1 270 < th dose independent sin 21 NA
24 35.16 temperature 20 270 > th dose dependent rect. 11 16
26 35.18 radiation 1 270 > th dose independent sin 21 NA
28 35.18 humidity 50 270 > th dose independent rect. 15 8
31 35.20 humidity 50 270 > th dose independent rect. 5 17
33 35.21 radiation 10 270 < th dose dependent rect. 14 8
36 35.22 temperature 10 270 > th dose dependent rect. 22 19
38 35.23 humidity 70 270 > th dose independent rect. 4 18
41 35.25 humidity 70 30 > th dose independent rect. 12 12
45 35.26 radiation 1 270 < th dose independent rect. 10 12
49 35.26 temperature 20 270 > th dose dependent rect. 11 19
51 35.27 radiation 1 270 < th dose independent rect. 12 10
53 35.27 humidity 60 10 > th dose dependent rect. 17 7
54 35.27 humidity 70 10 > th dose dependent rect. 14 10
63 35.31 humidity 50 270 > th dose dependent rect. 15 7
77 35.33 radiation 1 270 > th dose independent rect. 9 10
94 35.35 radiation 1 270 < th dose dependent sin 22 NA
106 35.37 temperature 10 270 > th dose dependent rect. 9 9
126 35.42 humidity 50 270 > th dose independent rect. 3 20
131 35.43 radiation 40 1440 < th dose dependent rect. 18 7
141 35.44 humidity 60 10 > th dose dependent rect. 12 12
157 35.47 radiation 40 270 < th dose independent rect. 6 16
164 35.49 humidity 60 30 > th dose independent rect. 7 17
192 35.52 radiation 1 30 < th dose dependent rect. 11 13
203 35.53 radiation 1 30 < th dose dependent rect. 13 11
212 35.54 radiation 10 270 < th dose dependent sin 19 NA
219 35.55 radiation 40 270 < th dose independent rect. 4 19
249 35.58 radiation 40 270 < th dose independent rect. 3 21
260 35.59 humidity 50 270 > th dose independent rect. 14 21
265 35.59 temperature 30 30 < th dose dependent rect. 7 17
295 35.62 humidity 50 10 > th dose dependent rect. 10 14
299 35.63 humidity 70 270 > th dose independent sin 20 NA
301 35.63 humidity 70 270 > th dose independent rect. 14 20
324 35.65 radiation 1 30 < th dose dependent rect. 15 9
333 35.66 humidity 60 270 > th dose dependent rect. 11 11
369 35.68 temperature 20 10 > th dose dependent rect. 16 15
372 35.68 radiation 40 270 < th dose dependent rect. 6 16
383 35.69 radiation 1 270 < th dose independent rect. 5 17
388 35.69 radiation 1 1440 < th dose dependent rect. 20 5
392 35.69 temperature 20 10 > th dose dependent rect. 16 11
433 35.72 radiation 1 270 < th dose dependent rect. 5 17
451 35.74 temperature 15 270 > th dose dependent rect. 11 7
510 35.77 temperature 30 270 < th dose dependent rect. 4 18
518 35.78 temperature 20 90 > th dose dependent sin 17 NA
583 35.81 temperature 20 90 > th dose dependent rect. 14 17
612 35.84 humidity 50 4320 < th dose independent rect. 15 1
623 35.85 humidity 60 270 > th dose independent rect. 17 20
649 35.86 temperature 10 30 > th dose dependent rect. 24 21
653 35.87 atmosphere 1005 90 > th dose independent rect. 7 7
657 35.87 radiation 40 30 < th dose independent rect. 7 17
659 35.87 humidity 50 30 > th dose dependent sin 18 NA
660 35.87 radiation 40 270 < th dose dependent sin 18 NA
677 35.88 atmosphere 1000 10 > th dose independent rect. 24 7
678 35.88 radiation 40 270 < th dose independent rect. 4 10
679 35.88 temperature 25 270 > th dose independent rect. 11 14
698 35.89 atmosphere 1005 30 > th dose independent rect. 7 9
728 35.90 temperature 30 90 < th dose independent rect. 18 6
733 35.90 radiation 1 270 > th dose dependent sin 18 NA
754 35.91 radiation 40 270 < th dose independent rect. 17 21
756 35.91 humidity 80 270 < th dose dependent sin 21 NA
838 35.95 wind 7 10 < th dose dependent rect. 24 7
845 35.95 temperature 15 90 > th dose dependent rect. 11 10
865 35.96 humidity 60 270 > th dose independent rect. 17 16
885 35.97 humidity 70 270 < th dose independent sin 20 NA
886 35.97 humidity 50 4320 < th dose independent rect. 14 3
887 35.97 temperature 10 1440 > th dose independent rect. 20 5
890 35.97 temperature 30 1440 < th dose independent rect. 20 5
894 35.97 humidity 50 1440 > th dose independent rect. 20 5
900 35.97 atmosphere 995 1440 > th dose independent rect. 20 5
901 35.97 radiation 1 1440 < th dose independent rect. 20 5
928 35.97 temperature 10 1440 > th dose independent rect. 1 19
950 35.98 temperature 25 270 > th dose independent rect. 11 7
975 35.99 temperature 20 270 > th dose independent rect. 23 18