BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0557500 Os02g0557500|AK112106
         (401 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10320.1  | chr1:3384164-3388373 REVERSE LENGTH=758            166   2e-41

>AT1G10320.1 | chr1:3384164-3388373 REVERSE LENGTH=758
          Length = 757

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 73/82 (89%)

Query: 1   MNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFRNPGGDYEWAD 60
           +NGRYFAGKQ+ CEFV ++RWKVAICGEYM+SR KTCSRG ACNFIHCFRNPGGDYEWAD
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 414

Query: 61  WDNPPPRYWIRKMAALFGPSDD 82
            D PPPR+WI KM +LFG SD+
Sbjct: 415 HDRPPPRFWIHKMTSLFGYSDE 436



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,133,272
Number of extensions: 271711
Number of successful extensions: 1271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1300
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)