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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0553000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0339) R2 : 0.00529
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.111 (0.0715) R2dN8 : 0.00684 R2N8 : 0.00529
σ : 0.639
deviance : 187.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.92 0.577 3 0.588 0.643 0.571 1.25 1.07 0.178 22.7 80.39 690 -- --
152.84 0.576 3.01 0.748 0.666 0.633 1.19 -- 0.184 22.8 78 774 -- --
155.46 0.581 3 0.579 0.643 0.613 -- 0.551 0.184 21.8 80.4 589 -- --
155.28 0.58 3 0.666 0.719 0.74 -- -- 0.19 22.2 76.21 712 -- --
161.04 0.594 2.99 0.604 -- 0.335 -- 0.748 0.173 -- 80.4 589 -- --
160.27 0.594 2.99 0.639 0.439 -- 1.14 -- 0.177 0.911 -- -- -- --
165.74 0.603 2.99 0.597 0.437 -- -- -- 0.172 0.652 -- -- -- --
164 0.596 2.99 0.591 -- 0.347 -- -- 0.165 -- 82 31 -- --
166.84 0.602 3.01 -- 0.699 0.7 -- -- 0.114 22.1 77 668 -- --
177.7 0.623 2.99 0.613 -- -- -- -- 0.179 -- -- -- -- --
175.15 0.619 3.01 -- 0.446 -- -- -- 0.105 0.716 -- -- -- --
173.29 0.613 3 -- -- 0.357 -- -- 0.113 -- 83.33 17 -- --
187.62 0.639 3 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.63 humidity 60.0 14400 > th dose independent rect. 16 1
2 146.90 precipitation 0.1 720 > th dose independent rect. 20 4
3 146.90 precipitation 0.1 720 > th dose dependent rect. 20 4
4 147.05 humidity 70.0 14400 < th dose independent rect. 18 1
7 147.21 humidity 70.0 14400 < th dose independent rect. 18 15
8 147.37 humidity 60.0 14400 < th dose independent rect. 16 1
9 147.71 humidity 70.0 14400 > th dose independent rect. 19 13
11 147.92 humidity 70.0 14400 > th dose independent rect. 18 15
14 148.21 wind 1.0 1440 > th dose independent rect. 8 5
17 148.27 humidity 80.0 14400 > th dose independent rect. 9 7
18 148.31 wind 1.0 1440 < th dose dependent rect. 24 1
20 148.32 wind 1.0 1440 < th dose independent rect. 8 7
24 148.41 wind 1.0 720 < th dose dependent rect. 23 4
27 148.43 humidity 80.0 14400 < th dose independent rect. 9 6
30 148.45 humidity 70.0 14400 < th dose independent rect. 17 5
42 148.47 humidity 50.0 720 > th dose dependent rect. 14 15
43 148.50 humidity 80.0 14400 > th dose independent rect. 13 1
54 148.64 humidity 80.0 14400 > th dose independent rect. 13 3
56 148.64 humidity 90.0 14400 < th dose dependent rect. 14 1
63 148.69 humidity 70.0 720 > th dose independent rect. 15 14
76 148.77 humidity 70.0 720 > th dose independent rect. 15 5
78 148.80 humidity 80.0 14400 < th dose independent rect. 10 1
79 148.80 humidity 80.0 14400 > th dose independent rect. 9 3
81 148.81 humidity 50.0 14400 > th dose dependent rect. 14 1
86 148.83 humidity 80.0 14400 > th dose independent rect. 10 1
89 148.85 humidity 80.0 14400 < th dose independent rect. 13 2
92 148.85 humidity 70.0 14400 < th dose dependent rect. 16 1
98 148.88 humidity 70.0 720 > th dose independent rect. 17 12
107 148.94 humidity 70.0 720 > th dose independent rect. 17 3
116 148.99 humidity 70.0 14400 > th dose dependent rect. 13 1
121 149.01 humidity 70.0 14400 > th dose dependent rect. 10 5
123 149.03 wind 1.0 1440 < th dose independent rect. 8 10
140 149.10 humidity 80.0 14400 > th dose dependent rect. 8 8
141 149.11 wind 1.0 1440 > th dose independent rect. 8 3
142 149.11 humidity 50.0 720 > th dose dependent sin 15 NA
157 149.16 humidity 70.0 14400 > th dose independent rect. 17 8
161 149.16 wind 1.0 1440 < th dose independent rect. 8 12
164 149.16 humidity 80.0 720 < th dose independent rect. 10 15
166 149.17 humidity 70.0 14400 > th dose independent rect. 17 5
171 149.17 humidity 80.0 14400 > th dose independent rect. 9 13
181 149.19 humidity 70.0 14400 < th dose dependent rect. 15 18
188 149.21 wind 1.0 720 < th dose independent rect. 22 5
197 149.23 humidity 80.0 720 > th dose independent rect. 10 19
198 149.23 humidity 80.0 720 < th dose dependent sin 13 NA
216 149.28 humidity 80.0 720 > th dose independent sin 16 NA
225 149.30 humidity 70.0 14400 < th dose dependent rect. 15 6
249 149.32 humidity 80.0 14400 < th dose independent rect. 9 13
255 149.33 humidity 80.0 720 > th dose independent rect. 10 15
258 149.34 humidity 80.0 720 < th dose independent sin 17 NA
274 149.35 humidity 60.0 14400 > th dose independent rect. 15 10
278 149.35 humidity 60.0 14400 > th dose independent rect. 15 15
279 149.35 wind 1.0 1440 < th dose independent rect. 9 18
286 149.36 humidity 60.0 14400 > th dose independent rect. 15 5
339 149.42 temperature 20.0 4320 > th dose independent rect. 21 2
350 149.44 wind 1.0 720 < th dose independent rect. 24 1
352 149.44 wind 9.0 14400 < th dose independent rect. 5 6
362 149.45 humidity 80.0 720 < th dose independent rect. 19 4
371 149.46 wind 1.0 1440 < th dose dependent rect. 9 18
372 149.47 humidity 80.0 14400 > th dose independent sin 22 NA
387 149.49 wind 1.0 1440 > th dose independent rect. 8 12
398 149.50 wind 3.0 1440 < th dose dependent rect. 8 3
401 149.50 wind 3.0 1440 < th dose dependent rect. 8 6
418 149.53 humidity 80.0 720 < th dose dependent rect. 15 16
421 149.54 humidity 90.0 14400 > th dose independent rect. 7 1
433 149.55 humidity 90.0 720 < th dose dependent rect. 15 13
444 149.57 humidity 80.0 720 < th dose independent rect. 14 10
445 149.57 humidity 70.0 14400 < th dose dependent sin 13 NA
500 149.64 humidity 80.0 720 > th dose independent rect. 14 11
529 149.67 humidity 60.0 720 > th dose dependent rect. 17 3
532 149.68 wind 3.0 4320 < th dose independent rect. 8 2
561 149.70 humidity 90.0 14400 > th dose dependent rect. 7 1
568 149.71 wind 5.0 14400 > th dose independent rect. 22 3
575 149.71 humidity 80.0 14400 > th dose dependent rect. 8 3
578 149.72 temperature 20.0 4320 < th dose independent rect. 21 2
579 149.72 humidity 90.0 14400 > th dose independent rect. 5 5
614 149.75 humidity 80.0 14400 < th dose independent sin 22 NA
619 149.75 humidity 60.0 720 > th dose dependent rect. 14 11
622 149.76 wind 3.0 43200 < th dose independent rect. 5 2
664 149.81 humidity 90.0 14400 < th dose independent rect. 6 3
711 149.87 wind 3.0 43200 > th dose independent rect. 5 2
782 149.92 wind 1.0 1440 > th dose independent rect. 8 19
786 149.92 humidity 60.0 720 > th dose dependent rect. 15 6
794 149.93 humidity 70.0 720 < th dose independent rect. 15 5
843 149.96 humidity 80.0 14400 > th dose dependent sin 23 NA
845 149.96 humidity 80.0 14400 > th dose dependent rect. 16 1
857 149.97 humidity 80.0 720 < th dose dependent rect. 19 5
868 149.98 wind 1.0 4320 > th dose dependent rect. 8 2
903 150.00 wind 1.0 1440 < th dose dependent rect. 12 15
909 150.01 humidity 90.0 14400 > th dose independent rect. 19 15
922 150.03 wind 9.0 14400 > th dose independent rect. 5 6
937 150.04 humidity 90.0 14400 > th dose independent rect. 15 19
938 150.04 humidity 90.0 14400 > th dose independent rect. 6 22
942 150.04 humidity 50.0 720 > th dose dependent rect. 17 8
947 150.05 humidity 90.0 14400 > th dose independent rect. 3 7
970 150.06 humidity 90.0 14400 > th dose independent rect. 13 21
975 150.06 humidity 80.0 720 < th dose dependent rect. 18 8
980 150.06 humidity 80.0 14400 > th dose dependent rect. 8 16
998 150.08 wind 9.0 4320 < th dose dependent rect. 8 2