Os02g0537700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (Thiol- specific antioxidant protein) (Fragment).
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Os02g0537700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (Thiol- specific antioxidant protein) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.04 | 0.326 | 15.1 | -0.913 | 1.05 | -0.66 | -0.0535 | -0.605 | -0.889 | 20.8 | 70 | 1552 | -- | -- |
| 48.73 | 0.325 | 15.1 | -0.988 | 1.05 | -0.694 | -0.0858 | -- | -0.922 | 20.9 | 70 | 1551 | -- | -- |
| 48.05 | 0.323 | 15.1 | -0.911 | 1.05 | -0.659 | -- | -0.609 | -0.888 | 20.8 | 70.03 | 1551 | -- | -- |
| 48.71 | 0.325 | 15.1 | -0.976 | 1.06 | -0.697 | -- | -- | -0.925 | 20.9 | 71.01 | 1552 | -- | -- |
| 70.03 | 0.39 | 15 | -0.803 | -- | -1.24 | -- | -0.786 | -0.868 | -- | 74 | 779 | -- | -- |
| 64.31 | 0.376 | 15 | -0.861 | 1.05 | -- | -0.0484 | -- | -0.824 | 20.6 | -- | -- | -- | -- |
| 64.32 | 0.376 | 15 | -0.86 | 1.05 | -- | -- | -- | -0.824 | 20.6 | -- | -- | -- | -- |
| 69.63 | 0.389 | 15 | -0.995 | -- | -1.32 | -- | -- | -0.907 | -- | 74 | 771 | -- | -- |
| 66 | 0.378 | 15.1 | -- | 0.994 | -1.06 | -- | -- | -0.903 | 20.5 | 72 | 25525 | -- | -- |
| 126 | 0.525 | 15 | -0.863 | -- | -- | -- | -- | -0.833 | -- | -- | -- | -- | -- |
| 83.8 | 0.428 | 15 | -- | 1.05 | -- | -- | -- | -0.728 | 20.6 | -- | -- | -- | -- |
| 95.3 | 0.455 | 15 | -- | -- | -1.22 | -- | -- | -0.79 | -- | 74 | 751 | -- | -- |
| 145.64 | 0.563 | 15 | -- | -- | -- | -- | -- | -0.737 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.71 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 47.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 3 | 47.91 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 4 | 47.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 11 | 48.08 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 13 | 48.10 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 17 | 48.15 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 20 | 48.21 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 22 | 48.23 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 52 | 48.39 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 64 | 48.46 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 162 | 48.70 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 207 | 48.70 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 233 | 48.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 243 | 48.75 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 265 | 48.81 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 269 | 48.82 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 439 | 49.04 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 442 | 49.05 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 460 | 49.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 527 | 49.20 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 585 | 49.28 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 588 | 49.28 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 603 | 49.29 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 610 | 49.30 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 615 | 49.31 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 632 | 49.32 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 634 | 49.32 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 642 | 49.33 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 648 | 49.34 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 759 | 49.38 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 805 | 49.42 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 828 | 49.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 863 | 49.47 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 888 | 49.48 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 921 | 49.50 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 955 | 49.52 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 958 | 49.52 | humidity | 60.0 | 1440 | > th | dose dependent | no | NA | NA |
| 963 | 49.52 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 987 | 49.54 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 995 | 49.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 999 | 49.55 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |