BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0537700 Os02g0537700|AK068919
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06290.1 | chr5:1919380-1921211 FORWARD LENGTH=274 384 e-107
AT3G11630.1 | chr3:3672189-3673937 FORWARD LENGTH=267 381 e-106
AT1G48130.1 | chr1:17780610-17781500 FORWARD LENGTH=217 96 1e-20
AT3G26060.2 | chr3:9524807-9526123 FORWARD LENGTH=218 78 6e-15
>AT5G06290.1 | chr5:1919380-1921211 FORWARD LENGTH=274
Length = 273
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/197 (92%), Positives = 192/197 (97%)
Query: 65 DDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR 124
DD PLVGNKAPDF+AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDR
Sbjct: 77 DDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDR 136
Query: 125 YDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPD 184
Y+EFEKLNTE+LGVS+DSVFSHLAWVQTDRKSGGLGDL YPL+SD+TKSISKSFGVLIPD
Sbjct: 137 YEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPD 196
Query: 185 QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGD 244
QGIALRGLFIIDKEGVIQHSTINNL IGRSVDETMRTLQALQYVQ+NPDEVCPAGWKPG+
Sbjct: 197 QGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGE 256
Query: 245 KSMKPDPKGSKEYFAAI 261
KSMKPDPK SKEYF+AI
Sbjct: 257 KSMKPDPKLSKEYFSAI 273
>AT3G11630.1 | chr3:3672189-3673937 FORWARD LENGTH=267
Length = 266
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/197 (92%), Positives = 190/197 (96%)
Query: 65 DDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR 124
DD PLVGNKAPDF+AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR
Sbjct: 70 DDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR 129
Query: 125 YDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPD 184
+ EFEKLNTE+LGVS+DSVFSHLAWVQTDRKSGGLGDL YPLISDVTKSISKSFGVLI D
Sbjct: 130 HSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHD 189
Query: 185 QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGD 244
QGIALRGLFIIDKEGVIQHSTINNL IGRSVDETMRTLQALQY+Q+NPDEVCPAGWKPG+
Sbjct: 190 QGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGE 249
Query: 245 KSMKPDPKGSKEYFAAI 261
KSMKPDPK SKEYF+AI
Sbjct: 250 KSMKPDPKLSKEYFSAI 266
>AT1G48130.1 | chr1:17780610-17781500 FORWARD LENGTH=217
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 70 VGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFE 129
+G+ P+ + E D+ KL DY + +LF +P DFT VC TE+ A + EF+
Sbjct: 6 LGDTVPNLEVETTHDK----FKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFD 61
Query: 130 KLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIAL 189
K ++LG+S D V SH W++ + YP+I+D K I ++ P +
Sbjct: 62 KRGVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPS 121
Query: 190 RGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVC-PAGWKP 242
R L I+ + I+ S + GR++DE +R L +L + +++ P WKP
Sbjct: 122 RALHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKP 175
>AT3G26060.2 | chr3:9524807-9526123 FORWARD LENGTH=218
Length = 217
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 71 GNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEK 130
G APDF + DQ V L Y GK V+L+FYP D T C + AF D Y++F+K
Sbjct: 73 GQAAPDFTLK---DQNGKPVSLKKYKGKP-VVLYFYPADETPGCTKQACAFRDSYEKFKK 128
Query: 131 LNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQ---GI 187
E++G+S D SH A+ + L Y L+SD + K +GV P +
Sbjct: 129 AGAEVIGISGDDSASHKAFASKYK-------LPYTLLSDEGNKVRKDWGV--PGDLFGAL 179
Query: 188 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQA 224
R +++DK GV+Q N + +DET++ L+A
Sbjct: 180 PGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,851,741
Number of extensions: 189604
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)