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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0528500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.21 (0.064) R2 : 0.707
β1 : -6.73 (0.239) R2dD : 0.553 R2D : 0.37
β2 : 1.97 (0.165) R2dC : 0.0923 R2C : 0.0864
β3 : 3.22 (0.173) R2dE : 0.241 R2E : 0.0746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.165 (0.137) R2dN8 : 0.00121 R2N8 : -0.00369
σ : 1.19
deviance : 656.8
__
_____
C
peak time of C : 7.19
E
wheather : temperature
threshold : 28.58
memory length : 1252
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
655.77 1.2 6.23 -7.13 1.98 3.43 0.761 -2.14 -0.073 7.14 29.05 1243 -- --
655.76 1.19 6.18 -6.74 1.97 3.24 0.791 -- -0.0677 7.16 28.88 1246 -- --
656.23 1.19 6.23 -7.14 1.97 3.45 -- -1.99 -0.163 7.2 28.5 1256 -- --
656.8 1.19 6.21 -6.73 1.97 3.22 -- -- -0.165 7.19 28.58 1252 -- --
857.87 1.36 6.29 -7.05 -- 3.38 -- -1.45 -0.175 -- 28.46 1309 -- --
1138.91 1.58 6.28 -5.84 2.06 -- 1.42 -- -0.494 6.14 -- -- -- --
1143.74 1.58 6.29 -5.82 2.06 -- -- -- -0.498 6.23 -- -- -- --
857.6 1.36 6.25 -6.73 -- 3.21 -- -- -0.142 -- 28.48 1309 -- --
1782.15 1.97 6.03 -- 1.93 2.28 -- -- 0.637 7.08 31.39 1181 -- --
1364.59 1.73 6.32 -5.77 -- -- -- -- -0.453 -- -- -- -- --
2037.03 2.11 6.14 -- 1.98 -- -- -- 0.15 6.39 -- -- -- --
1976.21 2.07 6.07 -- -- 2.27 -- -- 0.665 -- 31.65 1251 -- --
2241.4 2.21 6.18 -- -- -- -- -- 0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 673.13 temperature 30 1440 > th dose dependent rect. 16 20
3 675.20 temperature 30 1440 > th dose dependent sin 10 NA
14 677.63 temperature 30 1440 > th dose dependent sin 16 NA
24 678.67 humidity 80 1440 < th dose dependent rect. 16 18
28 679.19 temperature 30 1440 > th dose dependent rect. 9 10
43 679.46 temperature 30 1440 > th dose dependent no NA NA
170 680.03 temperature 25 720 > th dose dependent rect. 18 15
171 680.09 temperature 30 1440 > th dose dependent rect. 13 6
243 681.90 humidity 80 1440 < th dose dependent rect. 16 5
252 683.96 temperature 30 1440 > th dose independent rect. 17 19
258 684.74 temperature 30 1440 < th dose independent rect. 17 19
302 687.18 temperature 30 1440 < th dose independent rect. 15 21
305 687.60 temperature 30 1440 > th dose independent rect. 15 21
312 688.15 temperature 30 1440 > th dose independent sin 11 NA
337 689.49 temperature 30 1440 < th dose independent sin 11 NA
391 692.72 humidity 80 1440 < th dose dependent rect. 16 1
425 693.65 temperature 30 1440 < th dose independent rect. 9 20
427 693.69 temperature 30 1440 < th dose independent rect. 9 22
430 693.75 temperature 30 1440 < th dose independent rect. 9 13
433 693.77 temperature 30 1440 < th dose independent rect. 9 16
436 693.80 temperature 30 1440 < th dose independent rect. 9 10
441 693.88 temperature 30 1440 < th dose independent rect. 9 3
447 694.04 temperature 30 1440 > th dose independent rect. 9 3
455 694.36 temperature 30 1440 > th dose independent rect. 9 10
483 695.43 temperature 30 1440 < th dose independent rect. 6 23
486 695.45 temperature 30 1440 < th dose independent rect. 2 20
490 695.47 temperature 30 1440 < th dose independent rect. 2 23
494 695.50 temperature 30 1440 < th dose independent rect. 2 17
502 695.52 temperature 30 1440 < th dose independent rect. 20 23
504 695.53 temperature 30 1440 < th dose independent rect. 6 16
505 695.54 temperature 30 1440 < th dose independent no NA NA
519 695.56 temperature 30 1440 < th dose independent rect. 24 19
524 695.57 temperature 30 1440 < th dose independent rect. 6 13
582 695.95 temperature 30 1440 > th dose independent rect. 16 3
597 696.04 radiation 20 1440 > th dose dependent rect. 16 16
606 697.09 temperature 30 1440 > th dose independent no NA NA
700 697.41 temperature 30 1440 < th dose independent rect. 11 23
702 697.43 humidity 80 1440 < th dose dependent sin 13 NA
708 697.88 radiation 20 1440 > th dose independent rect. 16 16
745 698.75 temperature 30 1440 > th dose independent rect. 11 23
753 699.11 temperature 30 1440 < th dose independent sin 20 NA
760 699.22 temperature 25 1440 > th dose dependent rect. 7 1
781 699.67 temperature 30 1440 > th dose dependent rect. 10 2
821 701.16 temperature 30 1440 < th dose independent rect. 16 6
822 701.16 temperature 30 1440 < th dose independent rect. 16 13
825 701.23 temperature 30 1440 < th dose independent rect. 16 8
835 701.48 temperature 30 1440 < th dose independent rect. 16 15
856 702.00 humidity 70 1440 < th dose independent sin 12 NA
898 703.27 temperature 30 1440 < th dose independent rect. 2 10
899 703.34 temperature 30 1440 < th dose independent rect. 20 16
917 703.46 temperature 30 1440 < th dose independent rect. 24 12
920 703.48 temperature 30 1440 < th dose independent rect. 6 6
927 703.76 radiation 30 1440 > th dose independent rect. 7 1