Os02g0515200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0515200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.88 | 0.293 | 8.79 | 1.03 | 0.257 | -0.418 | -0.318 | 0.0582 | 0.438 | 5.91 | 20.55 | 15 | -- | -- |
| 38.89 | 0.29 | 8.79 | 1.03 | 0.258 | -0.416 | -0.319 | -- | 0.44 | 5.87 | 20.55 | 16 | -- | -- |
| 39.11 | 0.291 | 8.79 | 1.03 | 0.254 | -0.405 | -- | 0.0459 | 0.444 | 5.58 | 20.95 | 19 | -- | -- |
| 39.12 | 0.291 | 8.79 | 1.03 | 0.257 | -0.408 | -- | -- | 0.445 | 5.57 | 20.96 | 19 | -- | -- |
| 42.5 | 0.304 | 8.79 | 1 | -- | -0.434 | -- | 0.0549 | 0.441 | -- | 20.93 | 20 | -- | -- |
| 45.34 | 0.316 | 8.79 | 0.99 | 0.436 | -- | 0.00369 | -- | 0.431 | 2.76 | -- | -- | -- | -- |
| 45.34 | 0.315 | 8.79 | 0.99 | 0.436 | -- | -- | -- | 0.431 | 2.77 | -- | -- | -- | -- |
| 42.49 | 0.304 | 8.79 | 1.02 | -- | -0.446 | -- | -- | 0.439 | -- | 20.95 | 20 | -- | -- |
| 66.3 | 0.379 | 8.81 | -- | 0.307 | -0.328 | -- | -- | 0.339 | 5.06 | 19.98 | 18 | -- | -- |
| 56.38 | 0.351 | 8.79 | 1.01 | -- | -- | -- | -- | 0.442 | -- | -- | -- | -- | -- |
| 71.16 | 0.395 | 8.82 | -- | 0.455 | -- | -- | -- | 0.321 | 2.79 | -- | -- | -- | -- |
| 70.29 | 0.39 | 8.81 | -- | -- | -0.41 | -- | -- | 0.338 | -- | 19.98 | 17 | -- | -- |
| 83.2 | 0.426 | 8.82 | -- | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.51 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 10 | 37.36 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 12 |
| 11 | 37.37 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 12 |
| 12 | 37.38 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 13 | 37.39 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 28 | 37.70 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 31 | 37.72 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 34 | 37.76 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 10 |
| 41 | 37.86 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 56 | 38.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 58 | 38.06 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 6 |
| 59 | 38.06 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 18 |
| 91 | 38.28 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 110 | 38.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 119 | 38.41 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 136 | 38.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 150 | 38.55 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 13 |
| 151 | 38.58 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 8 |
| 181 | 38.69 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 6 |
| 188 | 38.71 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 6 |
| 191 | 38.72 | humidity | 80 | 270 | > th | dose independent | sin | 2 | NA |
| 193 | 38.73 | humidity | 70 | 10 | > th | dose independent | sin | 1 | NA |
| 210 | 38.76 | humidity | 80 | 270 | < th | dose independent | sin | 2 | NA |
| 211 | 38.76 | radiation | 20 | 30 | > th | dose independent | sin | 22 | NA |
| 310 | 38.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 359 | 39.02 | radiation | 40 | 30 | < th | dose dependent | rect. | 6 | 13 |
| 393 | 39.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 401 | 39.08 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 20 |
| 402 | 39.08 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 457 | 39.20 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 484 | 39.22 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 506 | 39.24 | humidity | 60 | 10 | > th | dose dependent | sin | 23 | NA |
| 547 | 39.28 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 4 |
| 559 | 39.29 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 15 |
| 571 | 39.30 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 7 |
| 574 | 39.31 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 607 | 39.36 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 5 |
| 675 | 39.41 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 14 |
| 697 | 39.43 | humidity | 90 | 10 | < th | dose dependent | sin | 23 | NA |
| 706 | 39.44 | radiation | 30 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 716 | 39.45 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 719 | 39.46 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 23 |
| 760 | 39.48 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 778 | 39.49 | temperature | 15 | 270 | > th | dose independent | rect. | 23 | 14 |
| 795 | 39.51 | humidity | 70 | 270 | > th | dose dependent | sin | 2 | NA |
| 796 | 39.51 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 798 | 39.52 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |
| 959 | 39.54 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 964 | 39.55 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 967 | 39.56 | humidity | 80 | 10 | < th | dose independent | sin | 23 | NA |
| 993 | 39.57 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 6 | 3 |
| 997 | 39.57 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 18 |