Os02g0504100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0504100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.82 | 0.248 | 8.66 | 1.9 | 0.31 | -0.835 | 0.339 | -0.682 | 0.391 | 20.9 | 30.72 | 34 | -- | -- |
| 28.28 | 0.248 | 8.67 | 1.8 | 0.294 | -0.952 | 0.249 | -- | 0.383 | 20.7 | 38.15 | 46 | -- | -- |
| 28.18 | 0.247 | 8.66 | 1.86 | 0.305 | -0.864 | -- | -0.534 | 0.388 | 21 | 31.49 | 36 | -- | -- |
| 28.47 | 0.249 | 8.67 | 1.78 | 0.295 | -0.983 | -- | -- | 0.376 | 21 | 52.64 | 45 | -- | -- |
| 29.35 | 0.252 | 8.65 | 1.85 | -- | -1.02 | -- | -0.601 | 0.387 | -- | 39.14 | 403 | -- | -- |
| 36.89 | 0.285 | 8.64 | 1.98 | 0.389 | -- | 0.594 | -- | 0.511 | 17.9 | -- | -- | -- | -- |
| 37.76 | 0.288 | 8.64 | 1.98 | 0.392 | -- | -- | -- | 0.514 | 18 | -- | -- | -- | -- |
| 29.6 | 0.253 | 8.67 | 1.75 | -- | -1.03 | -- | -- | 0.36 | -- | 54.63 | 406 | -- | -- |
| 103.22 | 0.473 | 8.74 | -- | 0.384 | -1.68 | -- | -- | 0.032 | 0.394 | 31.25 | 100 | -- | -- |
| 45.72 | 0.316 | 8.63 | 1.97 | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
| 140.84 | 0.555 | 8.69 | -- | 0.363 | -- | -- | -- | 0.293 | 18.2 | -- | -- | -- | -- |
| 51.2 | 0.333 | 8.77 | -- | -- | -1.62 | -- | -- | -0.112 | -- | 22.45 | 47520 | -- | -- |
| 147.68 | 0.567 | 8.68 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 6 | 27.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 7 | 27.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 9 | 27.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 10 | 27.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 32 | 27.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 27.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 36 | 27.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 42 | 27.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 55 | 27.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 63 | 27.85 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 66 | 27.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 71 | 27.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 72 | 27.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 73 | 27.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 75 | 27.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 96 | 27.94 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 141 | 28.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 148 | 28.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 156 | 28.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 157 | 28.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 158 | 28.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 162 | 28.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 179 | 28.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 228 | 28.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 255 | 28.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 264 | 28.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 280 | 28.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 323 | 28.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 389 | 28.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 390 | 28.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 393 | 28.22 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 416 | 28.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 485 | 28.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 586 | 28.32 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 603 | 28.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 751 | 28.38 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 780 | 28.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 783 | 28.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 941 | 28.44 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |