BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0504100 Os02g0504100|AK068973
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54310.1  | chr3:20111153-20112944 REVERSE LENGTH=359           93   3e-20
AT2G38430.1  | chr2:16092950-16094810 REVERSE LENGTH=394           74   1e-14

>AT3G54310.1 | chr3:20111153-20112944 REVERSE LENGTH=359
          Length = 358

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query: 21  LVSSAVIDPDVKGGLRWPLGKESIDERFSIVGVWHTNYKAFRNEKLRLKLRHADRFDHRS 80
           L  SAV+DP VKGGL+WPLGK S  +R+ + GVWHT    + N+ +RL++R ADR+D R+
Sbjct: 249 LTDSAVVDPTVKGGLKWPLGKSSCADRYIVCGVWHTVTTTYINQTMRLQIREADRYDFRT 308

Query: 81  STGEVSNEVTFKLIGISASL 100
             G  S+EV FKL  +S  L
Sbjct: 309 GVGGTSSEVNFKLKALSTIL 328



>AT2G38430.1 | chr2:16092950-16094810 REVERSE LENGTH=394
          Length = 393

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%)

Query: 7   IWFLQAEVKNAINCLVSSAVIDPDVKGGLRWPLGKESIDERFSIVGVWHTNYKAFRNEKL 66
           I +L  +    I  L+ SA +DP+VKGGLRWP GK   ++ +    V H     ++N+ L
Sbjct: 268 ITYLSDKEIGDIKALLESATVDPNVKGGLRWPFGKALSEDGYKEFEVCHVRATIYKNKTL 327

Query: 67  RLKLRHADRFDHRSSTGEVSNEVTFKLIGISASLE 101
           RL++R  DRF+  + TGE   EV+  L  I   ++
Sbjct: 328 RLRVRETDRFNETTGTGETKREVSLTLKDIDTKIQ 362



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,254,835
Number of extensions: 81203
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)