Os02g0503400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L35.
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Os02g0503400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L35.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.59 | 0.366 | 14 | 0.299 | 0.776 | 0.873 | 0.52 | -0.493 | 0.301 | 22 | 19.89 | 2922 | -- | -- |
| 60.95 | 0.364 | 14 | 0.347 | 0.783 | 0.999 | 0.533 | -- | 0.299 | 22 | 19.74 | 2976 | -- | -- |
| 61.64 | 0.366 | 14 | 0.284 | 0.78 | 0.867 | -- | -0.517 | 0.297 | 22 | 19.86 | 2946 | -- | -- |
| 61.97 | 0.367 | 14 | 0.342 | 0.78 | 0.979 | -- | -- | 0.311 | 22 | 19.8 | 2963 | -- | -- |
| 95.03 | 0.454 | 14 | 0.349 | -- | 0.914 | -- | -0.377 | 0.292 | -- | 20.6 | 2290 | -- | -- |
| 78.04 | 0.414 | 14 | 0.897 | 0.776 | -- | 0.578 | -- | 0.554 | 22.2 | -- | -- | -- | -- |
| 79.36 | 0.417 | 14 | 0.875 | 0.774 | -- | -- | -- | 0.553 | 22.1 | -- | -- | -- | -- |
| 95.14 | 0.454 | 14 | 0.41 | -- | 0.991 | -- | -- | 0.315 | -- | 20.22 | 2268 | -- | -- |
| 64.62 | 0.374 | 14 | -- | 0.779 | 1.21 | -- | -- | 0.256 | 22 | 19.08 | 4431 | -- | -- |
| 115.57 | 0.502 | 14 | 0.885 | -- | -- | -- | -- | 0.554 | -- | -- | -- | -- | -- |
| 99.53 | 0.467 | 14 | -- | 0.778 | -- | -- | -- | 0.455 | 22.2 | -- | -- | -- | -- |
| 97.73 | 0.46 | 14 | -- | -- | 1.15 | -- | -- | 0.256 | -- | 19.8 | 3719 | -- | -- |
| 136.24 | 0.545 | 14 | -- | -- | -- | -- | -- | 0.456 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 58.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 11 | 59.70 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 13 | 59.81 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 24 | 60.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 28 | 60.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 38 | 60.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 46 | 60.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 108 | 60.85 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 112 | 60.87 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 158 | 61.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 197 | 61.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 203 | 61.28 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 238 | 61.38 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 278 | 61.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 319 | 61.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 329 | 61.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 345 | 61.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 381 | 61.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 392 | 61.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 418 | 61.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 433 | 61.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 544 | 62.02 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 555 | 62.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 556 | 62.03 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 562 | 62.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 563 | 62.04 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 564 | 62.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 604 | 62.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 605 | 62.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 613 | 62.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 616 | 62.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 640 | 62.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 712 | 62.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 774 | 62.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 804 | 62.42 | wind | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 872 | 62.55 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 912 | 62.62 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 921 | 62.63 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 956 | 62.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |