Os02g0502500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0502500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.4 | 0.19 | 11.6 | 0.652 | 0.533 | 0.0582 | 0.00277 | -2.28 | 0.299 | 5.02 | 30.2 | 5022 | -- | -- |
| 16.71 | 0.19 | 11.5 | 1.05 | 0.556 | -0.169 | -0.0562 | -- | 0.389 | 5.42 | 30.3 | 13076 | -- | -- |
| 16.4 | 0.189 | 11.6 | 0.65 | 0.534 | 0.0596 | -- | -2.29 | 0.298 | 5.01 | 30.2 | 5038 | -- | -- |
| 16.18 | 0.187 | 11.5 | 1.12 | 0.539 | -0.236 | -- | -- | 0.458 | 5.21 | 31.1 | 13136 | -- | -- |
| 30.3 | 0.258 | 11.5 | 1.02 | -- | -0.249 | -- | -0.495 | 0.34 | -- | 30.1 | 4924 | -- | -- |
| 18.69 | 0.203 | 11.5 | 1.02 | 0.528 | -- | -0.0146 | -- | 0.342 | 5.13 | -- | -- | -- | -- |
| 18.69 | 0.202 | 11.5 | 1.02 | 0.528 | -- | -- | -- | 0.342 | 5.13 | -- | -- | -- | -- |
| 30.36 | 0.258 | 11.5 | 1.06 | -- | -0.285 | -- | -- | 0.345 | -- | 30.1 | 4924 | -- | -- |
| 27.71 | 0.245 | 11.6 | -- | 0.527 | 0.676 | -- | -- | 0.0673 | 5.19 | 18.5 | 47520 | -- | -- |
| 33.29 | 0.27 | 11.5 | 1.03 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 45.85 | 0.317 | 11.6 | -- | 0.546 | -- | -- | -- | 0.229 | 5.07 | -- | -- | -- | -- |
| 42.23 | 0.303 | 11.6 | -- | -- | 0.695 | -- | -- | 0.0736 | -- | 18.44 | 47520 | -- | -- |
| 61.49 | 0.366 | 11.6 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.57 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 6 | 15.70 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 8 | 15.71 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 22 | 15.80 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 25 | 15.81 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 35 | 15.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 43 | 15.86 | humidity | 50 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 155 | 15.95 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 219 | 15.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 251 | 15.98 | humidity | 80 | 14400 | > th | dose independent | sin | 17 | NA |
| 273 | 15.99 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 306 | 16.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 397 | 16.01 | humidity | 90 | 14400 | < th | dose dependent | sin | 16 | NA |
| 450 | 16.02 | humidity | 50 | 14400 | > th | dose dependent | sin | 16 | NA |
| 521 | 16.04 | humidity | 80 | 14400 | < th | dose independent | sin | 17 | NA |
| 525 | 16.04 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 603 | 16.06 | humidity | 70 | 14400 | < th | dose independent | sin | 15 | NA |
| 700 | 16.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 701 | 16.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 713 | 16.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 714 | 16.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 722 | 16.08 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 749 | 16.09 | humidity | 70 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 750 | 16.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 780 | 16.09 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 845 | 16.10 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 920 | 16.11 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |