Os02g0489400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S8.
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Os02g0489400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S8.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.31 | 0.502 | 12.7 | -0.462 | 1.15 | 0.514 | 0.823 | -1.79 | -0.271 | 16.5 | 19.9 | 2757 | -- | -- |
| 119.67 | 0.509 | 12.7 | -0.171 | 1.14 | 0.841 | 0.608 | -- | -0.215 | 16.4 | 19.9 | 2648 | -- | -- |
| 116.08 | 0.502 | 12.7 | -0.471 | 1.15 | 0.527 | -- | -1.83 | -0.272 | 16.5 | 19.85 | 2745 | -- | -- |
| 121.18 | 0.513 | 12.7 | -0.185 | 1.16 | 0.881 | -- | -- | -0.203 | 16.6 | 19 | 2725 | -- | -- |
| 186.44 | 0.636 | 12.7 | -0.446 | -- | 0.433 | -- | -1.79 | -0.268 | -- | 19.7 | 2953 | -- | -- |
| 132.57 | 0.54 | 12.6 | 0.262 | 1.11 | -- | 1.07 | -- | -0.00688 | 16.6 | -- | -- | -- | -- |
| 135.59 | 0.545 | 12.6 | 0.269 | 1.12 | -- | -- | -- | -0.00122 | 16.5 | -- | -- | -- | -- |
| 190.47 | 0.643 | 12.6 | -0.102 | -- | 0.792 | -- | -- | -0.191 | -- | 20 | 1715 | -- | -- |
| 121.76 | 0.514 | 12.7 | -- | 1.16 | 0.832 | -- | -- | -0.159 | 16.5 | 19.08 | 2720 | -- | -- |
| 202.49 | 0.665 | 12.6 | 0.226 | -- | -- | -- | -- | -0.0307 | -- | -- | -- | -- | -- |
| 137.51 | 0.549 | 12.6 | -- | 1.11 | -- | -- | -- | -0.0312 | 16.5 | -- | -- | -- | -- |
| 190.69 | 0.643 | 12.6 | -- | -- | 0.748 | -- | -- | -0.177 | -- | 20 | 1702 | -- | -- |
| 203.84 | 0.666 | 12.6 | -- | -- | -- | -- | -- | -0.0558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 109.17 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 5 | 109.42 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 8 | 109.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 16 | 110.02 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 29 | 110.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 54 | 111.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 73 | 111.54 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 77 | 111.57 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 92 | 111.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 96 | 112.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 118 | 112.42 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 136 | 112.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 144 | 112.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 164 | 112.93 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 171 | 113.00 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 264 | 113.78 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 269 | 113.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 271 | 113.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 276 | 113.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 361 | 114.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 363 | 114.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 384 | 114.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 400 | 114.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 408 | 114.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 418 | 114.44 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 421 | 114.45 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 422 | 114.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 445 | 114.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 446 | 114.53 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 457 | 114.56 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 496 | 114.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 508 | 114.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 540 | 114.83 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 586 | 114.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 640 | 115.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 730 | 115.31 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 794 | 115.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 962 | 115.82 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 984 | 115.86 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 994 | 115.88 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |