BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0489400 Os02g0489400|AK102402
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59240.1 | chr5:23902626-23903670 REVERSE LENGTH=211 328 1e-90
AT5G20290.1 | chr5:6851695-6853012 REVERSE LENGTH=223 296 6e-81
>AT5G59240.1 | chr5:23902626-23903670 REVERSE LENGTH=211
Length = 210
Score = 328 bits (842), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/207 (78%), Positives = 170/207 (82%), Gaps = 11/207 (5%)
Query: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTXXXXXXXXXXXKWRALR 60
MGISRDS+HKRRATGGKQK WRKKRKYELGRQPANTKLSSNKT KWRALR
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YL HYGV
Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120
Query: 121 DIGRXXXXXXXXXXXEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180
DIGR + TTEE KKSNHV RKLE RQ+GR LD+H+EEQF SGRLL
Sbjct: 121 DIGRKK-----------KGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLL 169
Query: 181 ACISSRPGQCGRADGYILEGKELEFYM 207
ACI+SRPGQCGRADGYILEGKELEFYM
Sbjct: 170 ACIASRPGQCGRADGYILEGKELEFYM 196
>AT5G20290.1 | chr5:6851695-6853012 REVERSE LENGTH=223
Length = 222
Score = 296 bits (758), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 158/210 (75%), Positives = 173/210 (82%), Gaps = 3/210 (1%)
Query: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTXXXXXXXXXXXKWRALR 60
MGISRDS+HKRRATGGKQK WRKKRKYE+GRQPANTKLSSNKT KWRALR
Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL+HYGV
Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120
Query: 121 DIGRXXXXXXXX---XXXEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSG 177
++GR + A A EE KKSNH++RK+ RQ+GR+LD+HIE+QF SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180
Query: 178 RLLACISSRPGQCGRADGYILEGKELEFYM 207
RLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYM 210
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,199,259
Number of extensions: 144415
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)