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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0463500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0482) R2 : 0.104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.73 (0.528) R2dE : 0.098 R2E : 0.0985
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.155 (0.102) R2dN8 : 0.00591 R2N8 : 0.00643
σ : 0.906
deviance : 378.01
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.799
memory length : 74
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.05
open length of G : 0.751

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
363.54 0.896 2.95 0.529 0.00209 5.99 0.365 23.7 -0.103 14.5 2.854 83 3.99 0.853
392.58 0.923 2.95 0.641 0.0566 5.25 0.118 -- -0.0754 2.34 2.68 88 4.03 0.817
361.78 0.886 2.95 0.551 0.00224 5.93 -- 23.5 -0.102 12.2 2.898 81 4.02 0.861
374.58 0.901 2.94 0.518 0.00421 4.31 -- -- -0.0912 14.9 2.9 74 4.02 0.817
361.37 0.885 2.95 0.539 -- 5.98 -- 23.1 -0.109 -- 2.9 81 4.01 0.85
409.91 0.949 2.95 0.537 0.121 -- 0.499 -- -0.126 7.02 -- -- -- --
410.49 0.949 2.95 0.545 0.129 -- -- -- -0.128 5.99 -- -- -- --
373.12 0.9 2.94 0.563 -- 4.36 -- -- -0.0459 -- 2.718 74 4.07 0.727
377.98 0.905 2.96 -- 0.0198 3.72 -- -- -0.154 2.36 2.799 74 4.05 0.751
411.35 0.948 2.96 0.549 -- -- -- -- -0.125 -- -- -- -- --
418.32 0.957 2.97 -- 0.137 -- -- -- -0.189 5.79 -- -- -- --
378.01 0.906 2.96 -- -- 3.73 -- -- -0.155 -- 2.799 74 4.05 0.751
419.3 0.956 2.97 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.35 wind 1.0 90 > th dose dependent rect. 4 1
2 377.05 wind 3.0 90 > th dose independent rect. 4 1
3 380.12 wind 1.0 90 > th dose dependent rect. 4 3
4 380.47 wind 1.0 270 > th dose dependent rect. 2 4
6 380.58 temperature 30.0 10 > th dose dependent rect. 18 1
21 381.67 radiation 1.0 30 > th dose independent rect. 18 13
22 382.09 humidity 70.0 10 < th dose dependent rect. 18 2
34 382.53 wind 1.0 90 > th dose independent rect. 4 3
38 383.92 wind 3.0 10 > th dose dependent rect. 18 1
40 384.00 wind 5.0 10 > th dose independent rect. 18 1
42 384.47 temperature 20.0 90 < th dose dependent rect. 5 1
52 385.10 wind 3.0 270 > th dose independent rect. 2 4
55 385.36 temperature 20.0 30 < th dose dependent rect. 5 15
62 385.83 temperature 20.0 30 < th dose dependent rect. 5 7
88 386.34 wind 1.0 10 > th dose independent rect. 7 11
93 386.56 humidity 60.0 90 > th dose dependent rect. 7 21
98 386.90 wind 1.0 90 > th dose independent rect. 7 10
101 387.08 humidity 90.0 10 < th dose independent rect. 13 18
103 387.14 radiation 1.0 30 > th dose independent sin 12 NA
105 387.16 humidity 70.0 10 < th dose independent rect. 18 2
117 387.27 radiation 1.0 30 > th dose independent rect. 13 18
121 387.37 temperature 30.0 90 < th dose dependent rect. 4 3
130 387.46 radiation 1.0 30 < th dose independent sin 12 NA
139 387.77 temperature 30.0 10 > th dose independent rect. 18 1
154 387.78 humidity 50.0 270 > th dose dependent rect. 17 9
172 388.05 temperature 30.0 270 < th dose dependent rect. 2 4
175 388.29 radiation 1.0 30 > th dose independent rect. 5 2
194 388.53 atmosphere 995.0 10 > th dose independent rect. 7 11
195 388.53 humidity 90.0 10 < th dose dependent rect. 18 13
198 388.57 wind 1.0 90 < th dose dependent rect. 12 9
253 389.43 temperature 30.0 90 < th dose independent rect. 7 21
274 389.70 atmosphere 995.0 270 > th dose independent rect. 6 20
276 389.84 wind 9.0 1440 < th dose independent rect. 5 3
277 389.84 temperature 10.0 1440 > th dose independent rect. 5 3
280 389.84 temperature 30.0 1440 < th dose independent rect. 5 3
284 389.84 humidity 50.0 1440 > th dose independent rect. 5 3
289 389.84 atmosphere 995.0 1440 > th dose independent rect. 5 3
290 389.84 atmosphere 1015.0 1440 < th dose independent rect. 5 3
292 389.84 temperature 10.0 1440 > th dose independent rect. 8 21
298 389.90 radiation 1.0 30 > th dose dependent rect. 18 1
312 389.97 humidity 60.0 90 > th dose dependent rect. 9 18
332 390.26 radiation 1.0 30 < th dose dependent sin 12 NA
335 390.28 wind 1.0 270 > th dose independent rect. 15 15
362 390.40 atmosphere 995.0 30 > th dose independent rect. 7 22
364 390.43 temperature 30.0 90 > th dose dependent rect. 17 2
416 390.80 humidity 60.0 10 > th dose dependent rect. 10 17
424 390.87 humidity 80.0 270 > th dose independent rect. 2 4
427 390.90 radiation 40.0 1440 < th dose independent rect. 5 3
431 390.92 wind 1.0 90 < th dose independent rect. 12 10
432 390.93 atmosphere 1000.0 270 > th dose independent rect. 2 4
467 391.09 radiation 1.0 270 < th dose dependent rect. 7 19
495 391.28 temperature 20.0 90 < th dose independent rect. 5 2
500 391.30 temperature 30.0 270 < th dose independent rect. 21 14
516 391.42 humidity 60.0 90 > th dose independent rect. 7 21
522 391.44 radiation 1.0 270 < th dose dependent rect. 10 16
526 391.45 radiation 1.0 270 < th dose dependent rect. 12 14
530 391.46 humidity 90.0 10 < th dose independent rect. 18 13
532 391.46 radiation 1.0 270 < th dose dependent rect. 14 12
557 391.53 humidity 80.0 30 > th dose independent rect. 5 2
558 391.53 radiation 1.0 270 < th dose independent rect. 7 19
567 391.59 radiation 20.0 10 < th dose independent rect. 18 14
574 391.66 atmosphere 1000.0 30 < th dose independent rect. 18 4
582 391.67 atmosphere 1000.0 90 < th dose dependent rect. 19 3
641 391.82 atmosphere 995.0 270 > th dose independent rect. 6 10
657 391.89 humidity 80.0 270 > th dose independent rect. 19 7
664 391.92 humidity 50.0 30 > th dose independent rect. 13 18
669 391.94 humidity 90.0 10 > th dose independent rect. 21 8
672 391.97 radiation 1.0 270 < th dose independent rect. 10 16
675 391.98 radiation 1.0 270 < th dose independent rect. 17 9
678 391.99 radiation 1.0 270 < th dose independent rect. 13 13
694 392.03 wind 1.0 90 < th dose dependent rect. 12 1
702 392.07 precipitation 0.1 270 < th dose independent rect. 2 4
703 392.07 precipitation 0.1 270 < th dose dependent rect. 2 4
710 392.11 atmosphere 1010.0 270 < th dose independent rect. 2 4
712 392.11 radiation 40.0 270 < th dose dependent rect. 14 12
719 392.14 atmosphere 1000.0 90 > th dose independent rect. 4 3
727 392.19 temperature 15.0 270 > th dose independent rect. 6 20
728 392.20 radiation 10.0 270 < th dose independent rect. 2 4
731 392.21 temperature 30.0 720 < th dose independent rect. 6 5
734 392.22 wind 9.0 270 < th dose independent rect. 2 4
735 392.22 temperature 10.0 270 > th dose independent rect. 2 4
737 392.22 temperature 30.0 270 < th dose independent rect. 2 4
738 392.22 humidity 50.0 270 > th dose independent rect. 2 4
753 392.25 temperature 30.0 270 < th dose independent rect. 6 9
755 392.25 humidity 60.0 10 > th dose dependent rect. 16 11
784 392.33 temperature 20.0 90 < th dose dependent sin 0 NA
787 392.34 wind 9.0 90 < th dose independent rect. 17 14
794 392.37 humidity 80.0 90 > th dose independent rect. 7 21
797 392.38 radiation 20.0 720 < th dose independent rect. 15 11
804 392.41 temperature 10.0 90 > th dose independent rect. 7 10
805 392.41 atmosphere 1015.0 90 < th dose independent rect. 7 10
806 392.41 temperature 10.0 90 > th dose independent rect. 17 14
807 392.41 radiation 30.0 90 < th dose independent rect. 17 14
809 392.41 wind 9.0 270 < th dose independent rect. 6 20
811 392.41 wind 1.0 90 < th dose dependent rect. 17 4
817 392.42 radiation 40.0 270 < th dose dependent rect. 2 4
831 392.48 temperature 30.0 90 > th dose independent rect. 17 2
857 392.55 wind 1.0 90 < th dose dependent rect. 20 1
864 392.58 wind 1.0 90 < th dose independent rect. 12 1
866 392.59 temperature 20.0 10 < th dose independent rect. 5 1
923 392.67 humidity 60.0 10 > th dose dependent rect. 14 13
940 392.75 humidity 90.0 10 < th dose independent rect. 4 3
945 392.76 temperature 10.0 1440 > th dose independent rect. 21 8
948 392.76 temperature 30.0 1440 < th dose independent rect. 21 8
952 392.76 humidity 50.0 1440 > th dose independent rect. 21 8
958 392.76 atmosphere 995.0 1440 > th dose independent rect. 21 8
959 392.76 radiation 20.0 1440 < th dose independent rect. 21 8
971 392.76 temperature 10.0 1440 > th dose independent rect. 5 16
986 392.80 radiation 1.0 30 < th dose dependent rect. 20 22