Os02g0461800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os02g0461800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.92 | 0.495 | 8.07 | 1.85 | 1.54 | -3.32 | 0.58 | 1.71 | 0.524 | 16.7 | 3.968 | 434 | -- | -- |
| 112.53 | 0.494 | 8.11 | 1.58 | 1.52 | -3.25 | 0.945 | -- | 0.461 | 16.8 | 9.299 | 469 | -- | -- |
| 111.69 | 0.492 | 8.06 | 1.91 | 1.54 | -3.3 | -- | 2.14 | 0.542 | 16.6 | 0.05001 | 427 | -- | -- |
| 114.47 | 0.498 | 8.1 | 1.57 | 1.48 | -3.22 | -- | -- | 0.449 | 16.9 | -3.72 | 487 | -- | -- |
| 135.66 | 0.542 | 8.06 | 1.86 | -- | -2.65 | -- | 1.05 | 0.49 | -- | 15.62 | 1184 | -- | -- |
| 232.53 | 0.715 | 8.19 | 0.834 | 0.774 | -- | 0.41 | -- | -0.0331 | 15 | -- | -- | -- | -- |
| 233.09 | 0.715 | 8.19 | 0.843 | 0.776 | -- | -- | -- | -0.0307 | 15 | -- | -- | -- | -- |
| 136.52 | 0.544 | 8.08 | 1.65 | -- | -2.79 | -- | -- | 0.444 | -- | 14.11 | 1183 | -- | -- |
| 172.68 | 0.612 | 8.16 | -- | 1.34 | -2.52 | -- | -- | 0.184 | 16.5 | 7.989 | 429 | -- | -- |
| 267.62 | 0.764 | 8.19 | 0.81 | -- | -- | -- | -- | -0.0508 | -- | -- | -- | -- | -- |
| 251.84 | 0.742 | 8.21 | -- | 0.76 | -- | -- | -- | -0.125 | 15 | -- | -- | -- | -- |
| 199.5 | 0.658 | 8.15 | -- | -- | -2.11 | -- | -- | 0.161 | -- | 11.27 | 1154 | -- | -- |
| 284.94 | 0.788 | 8.21 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 10 | 113.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 22 | 113.94 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 24 | 114.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 30 | 114.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 51 | 115.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 92 | 116.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 99 | 116.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 112 | 117.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 181 | 117.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 215 | 118.20 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 262 | 118.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 276 | 118.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 353 | 119.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 355 | 119.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 379 | 119.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 383 | 119.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 408 | 119.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 702 | 120.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 708 | 120.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 858 | 121.30 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 940 | 121.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |