BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0461800 Os02g0461800|Os02g0461800
         (811 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               60   4e-09
AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263          51   3e-06

>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 471 NQTVVGMAQAFLKQRGMPAIFWGEAVVTAVYILNHSPTEALDSRTPYEAWHGRKPAISYL 530
           N+T++   ++ L + G+P  F  +A  TAV+I+N  P+ A++   P E W    P  SYL
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 531 RVFGCLAF 538
           R FGC+A+
Sbjct: 62  RRFGCVAY 69



>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 746 EPQSFAEAKRHAAWRAVMQSKMDAVQENRTWELADLPRGHRAITLKWVFKLKRDAQG 802
           EP ++ EAK    W   M  ++ A++   TWE+  LP   + I  KWV+K+K ++ G
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,064,310
Number of extensions: 613916
Number of successful extensions: 1178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 2
Length of query: 811
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 704
Effective length of database: 8,173,057
Effective search space: 5753832128
Effective search space used: 5753832128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)