Os02g0326700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os02g0326700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.22 | 0.487 | 11.8 | -1.08 | 1.72 | -1.03 | -1.22 | -0.996 | -0.188 | 8.5 | 50 | 6595 | -- | -- |
| 108.75 | 0.486 | 11.8 | -1.09 | 1.73 | -1.26 | -1.18 | -- | -0.212 | 8.53 | 49 | 6492 | -- | -- |
| 111.93 | 0.493 | 11.8 | -1.12 | 1.72 | -1.02 | -- | -0.957 | -0.188 | 8.53 | 49.87 | 6492 | -- | -- |
| 113.29 | 0.496 | 11.8 | -1.12 | 1.72 | -1.27 | -- | -- | -0.203 | 8.52 | 49.51 | 6494 | -- | -- |
| 191.25 | 0.644 | 11.7 | -1.16 | -- | -1.55 | -- | -0.373 | 0.176 | -- | 80 | 711 | -- | -- |
| 133.5 | 0.542 | 11.7 | -1.46 | 1.74 | -- | -1.09 | -- | -0.0955 | 8.56 | -- | -- | -- | -- |
| 137.32 | 0.549 | 11.7 | -1.49 | 1.74 | -- | -- | -- | -0.095 | 8.6 | -- | -- | -- | -- |
| 177.1 | 0.62 | 11.7 | -1.29 | -- | -1.98 | -- | -- | 0.0146 | -- | 74 | 741 | -- | -- |
| 142.43 | 0.556 | 11.7 | -- | 1.72 | -1.74 | -- | -- | -0.134 | 8.53 | 49.85 | 6492 | -- | -- |
| 307.56 | 0.819 | 11.8 | -1.49 | -- | -- | -- | -- | -0.0794 | -- | -- | -- | -- | -- |
| 196.05 | 0.655 | 11.7 | -- | 1.73 | -- | -- | -- | 0.0712 | 8.66 | -- | -- | -- | -- |
| 221.51 | 0.693 | 11.7 | -- | -- | -2.08 | -- | -- | 0.153 | -- | 74.45 | 760 | -- | -- |
| 365.9 | 0.893 | 11.7 | -- | -- | -- | -- | -- | 0.0856 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.86 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 3 | 96.00 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 4 | 96.09 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 5 | 96.15 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 6 | 96.21 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 27 | 96.99 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 38 | 97.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 45 | 97.87 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 56 | 98.15 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 67 | 98.41 | wind | 1 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 70 | 98.46 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 86 | 98.74 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 98 | 98.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 13 |
| 112 | 99.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 13 |
| 114 | 99.04 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 124 | 99.19 | wind | 3 | 14400 | < th | dose dependent | sin | 7 | NA |
| 166 | 99.49 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 169 | 99.52 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 199 | 99.73 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 206 | 99.80 | wind | 3 | 14400 | < th | dose independent | sin | 8 | NA |
| 214 | 99.87 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 272 | 100.32 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 276 | 100.39 | wind | 3 | 14400 | > th | dose independent | sin | 8 | NA |
| 292 | 100.59 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 379 | 101.25 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 438 | 101.73 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 534 | 102.27 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 659 | 102.92 | wind | 1 | 14400 | > th | dose dependent | sin | 8 | NA |
| 687 | 103.06 | wind | 3 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 883 | 104.05 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 973 | 104.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 986 | 104.47 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 7 |