BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0326700 Os02g0326700|AK064977
         (347 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38510.1  | chr5:15417839-15420002 REVERSE LENGTH=435          152   3e-37
AT1G25290.1  | chr1:8867157-8868945 FORWARD LENGTH=344             50   2e-06

>AT5G38510.1 | chr5:15417839-15420002 REVERSE LENGTH=435
          Length = 434

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 14/240 (5%)

Query: 95  SNASRKMEVNHLGALRCYFSKLNTEDAQKPYSFHQTNKQRTGPLSTNIEEANMATDYGDF 154
           +++  K+    L  L  YF KL  +D +KP      +  R   L+ N EE +  + Y D 
Sbjct: 69  ASSENKITKQRLKLLDSYFGKLQNDD-EKPSISTGDDIDRKAELNVN-EELDSLSAYLDK 126

Query: 155 ------RNTLESFEINFNRRKKGTKG--YLNTAVEDYTNYLIFDEKNFLDMQQDDQTSSF 206
                    L S  ++  + + G+       T +E+  +      + F D  Q + T +F
Sbjct: 127 LQKDAKSKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPF----QQFDDEDQAEDTLNF 182

Query: 207 CXXXXXXXXXXXXXXFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHS 266
                          FE A+PVRN+++  LSLPL+YGAKINDLIL+GEWWRL+TPM LHS
Sbjct: 183 YAVSILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHS 242

Query: 267 GFLHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYLHTSELTVCGTDTSWG 326
           G  H+AL  W LL FGP+V R YG  TF L+YILGGV GN  S+LHT++ TV GT  ++ 
Sbjct: 243 GIPHVALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFA 302



>AT1G25290.1 | chr1:8867157-8868945 FORWARD LENGTH=344
          Length = 343

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 240 LMYGAKINDLILSGEWWRLLTPMCLHSGFLHIALGCWVLLIFGPRVSRAYGQTTFLLMYI 299
           L +GAKIN LI  G+ WRL T   LH+  +H+ + C+ L   GP      G   FL +Y 
Sbjct: 152 LTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVY- 210

Query: 300 LGGVCGNLTSYLHTSELTVCGTDTSW 325
                  LTS +    L V G+  S+
Sbjct: 211 -------LTSAVAKPILRVLGSAMSY 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,437,954
Number of extensions: 297304
Number of successful extensions: 728
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 5
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)