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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0324400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0586) R2 : 0.451
β1 : -3.52 (0.218) R2dD : 0.366 R2D : 0.18
β2 : 1.51 (0.144) R2dC : 0.146 R2C : 0.0439
β3 : -1.16 (0.16) R2dE : 0.0873 R2E : -0.156
β4 : 2.74 (0.516) R2dD*C : 0.0376 R2D*C : -0.0131
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.23 (0.137) R2dN8 : 0.161 R2N8 : -0.0393
σ : 1.07
deviance : 523.83
__
_____
C
peak time of C : 11.5
E
wheather : temperature
threshold : 24.2
memory length : 782
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
527.55 1.08 6.3 -3.66 1.6 -1.25 2.82 0.429 -1.27 11.3 24.8 832 -- --
523.83 1.07 6.29 -3.52 1.51 -1.16 2.74 -- -1.23 11.5 24.2 782 -- --
556.89 1.1 6.32 -3.83 1.49 -1.17 -- 1.22 -1.32 11.3 24.2 754 -- --
559.41 1.1 6.28 -3.42 1.48 -1.11 -- -- -1.19 11.6 24.2 782 -- --
609.32 1.16 6.28 -3.17 -- -0.988 -- -0.92 -1.11 -- 23.78 1645 -- --
579.81 1.13 6.2 -3.13 1.14 -- 2.84 -- -0.764 11.6 -- -- -- --
614.25 1.16 6.19 -3.02 1.13 -- -- -- -0.751 11.9 -- -- -- --
614.07 1.16 6.31 -3.48 -- -1.01 -- -- -1.2 -- 23.78 1645 -- --
842.24 1.35 6.17 -- 1.15 -0.439 -- -- -0.616 11.8 23.8 377 -- --
694.72 1.23 6.22 -3.05 -- -- -- -- -0.765 -- -- -- -- --
854.04 1.37 6.12 -- 1.17 -- -- -- -0.415 12 -- -- -- --
905.12 1.41 6.18 -- -- -0.721 -- -- -0.609 -- 22.01 30 -- --
940.16 1.43 6.14 -- -- -- -- -- -0.427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 519.43 radiation 10 1440 < th dose dependent rect. 11 7
6 520.13 radiation 10 1440 < th dose dependent rect. 11 16
7 520.14 radiation 10 1440 < th dose dependent rect. 11 14
26 521.50 humidity 90 43200 > th dose independent rect. 4 2
52 523.12 temperature 20 270 > th dose dependent rect. 18 15
53 523.17 temperature 30 270 < th dose dependent sin 9 NA
56 523.49 radiation 10 1440 < th dose dependent sin 17 NA
59 523.78 radiation 10 1440 > th dose independent rect. 11 19
60 523.88 temperature 25 720 > th dose independent rect. 13 11
61 523.90 radiation 10 1440 > th dose independent rect. 11 7
73 523.99 temperature 30 90 < th dose dependent sin 7 NA
76 524.28 humidity 90 720 > th dose independent rect. 21 2
77 524.42 radiation 40 1440 < th dose dependent rect. 16 1
81 524.68 radiation 1 1440 > th dose dependent rect. 16 1
82 524.70 radiation 1 1440 < th dose independent rect. 11 9
86 524.80 radiation 1 1440 < th dose independent rect. 11 16
89 524.83 radiation 1 1440 < th dose independent rect. 11 14
105 525.13 temperature 25 720 > th dose independent rect. 13 20
107 525.15 wind 5 43200 > th dose independent rect. 20 1
125 525.44 temperature 20 90 > th dose dependent sin 8 NA
129 525.62 temperature 25 270 < th dose dependent rect. 22 21
130 525.64 temperature 30 270 < th dose dependent rect. 22 11
146 525.92 wind 5 43200 < th dose independent rect. 20 1
149 526.00 temperature 10 270 > th dose dependent sin 9 NA
163 526.36 temperature 30 720 < th dose dependent sin 14 NA
165 526.39 temperature 30 720 < th dose dependent rect. 15 15
167 526.46 temperature 25 720 < th dose independent rect. 13 11
186 526.78 temperature 25 720 < th dose independent rect. 11 13
203 527.00 radiation 10 1440 > th dose independent sin 16 NA
214 527.05 radiation 1 1440 < th dose independent sin 18 NA
227 527.15 temperature 10 90 > th dose dependent sin 7 NA
247 527.23 temperature 20 720 > th dose dependent sin 13 NA
249 527.24 humidity 90 43200 > th dose dependent rect. 10 1
250 527.25 radiation 10 1440 > th dose independent rect. 11 1
260 527.31 temperature 25 720 > th dose dependent rect. 21 2
271 527.37 humidity 90 43200 < th dose independent rect. 3 5
273 527.37 temperature 30 720 < th dose dependent rect. 17 11
339 527.71 radiation 40 1440 < th dose dependent rect. 16 5
346 527.73 radiation 10 1440 > th dose dependent rect. 16 14
376 527.89 humidity 90 720 > th dose dependent rect. 21 2
418 528.11 temperature 25 720 < th dose independent rect. 13 20
458 528.31 humidity 90 43200 < th dose independent rect. 20 10
461 528.33 temperature 25 720 < th dose independent sin 17 NA
506 528.51 temperature 25 720 > th dose independent sin 17 NA
513 528.53 radiation 40 1440 < th dose dependent rect. 16 11
574 528.94 temperature 25 720 > th dose independent rect. 7 18
642 529.39 temperature 25 720 < th dose independent rect. 19 4
685 529.50 radiation 20 1440 > th dose independent rect. 16 15
731 529.70 wind 9 43200 < th dose independent rect. 19 11
752 529.84 humidity 90 43200 > th dose independent rect. 10 1
807 530.07 humidity 90 43200 < th dose independent sin 9 NA
811 530.08 wind 9 43200 > th dose independent rect. 19 11
818 530.12 temperature 25 270 < th dose dependent rect. 11 22
856 530.24 temperature 10 720 > th dose dependent sin 13 NA
862 530.27 temperature 25 720 < th dose independent rect. 3 21
903 530.41 radiation 20 1440 > th dose independent rect. 16 1
937 530.43 humidity 90 43200 < th dose independent rect. 4 2
940 530.44 temperature 25 720 < th dose independent rect. 5 19