BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0324400 Os02g0324400|AK061156
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73965.1  | chr1:27815822-27816145 FORWARD LENGTH=108           50   4e-07
AT1G68795.1  | chr1:25841079-25841435 REVERSE LENGTH=119           49   1e-06
AT1G26600.1  | chr1:9191684-9192046 FORWARD LENGTH=121             47   4e-06

>AT1G73965.1 | chr1:27815822-27816145 FORWARD LENGTH=108
          Length = 107

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%), Gaps = 4/36 (11%)

Query: 96  NRKGVPPTAAGPGEEVDPRFGVQKRLVPTGPNPLHH 131
           +RK +P   AG G E+DPR+GV+KRLVP+GPNPLHH
Sbjct: 76  HRKALP---AG-GSEIDPRYGVEKRLVPSGPNPLHH 107



>AT1G68795.1 | chr1:25841079-25841435 REVERSE LENGTH=119
          Length = 118

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 23/24 (95%)

Query: 108 GEEVDPRFGVQKRLVPTGPNPLHH 131
           G+E+DPR+GV+KR VP+GPNPLHH
Sbjct: 95  GDEIDPRYGVEKRRVPSGPNPLHH 118



>AT1G26600.1 | chr1:9191684-9192046 FORWARD LENGTH=121
          Length = 120

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 102 PTAAGPGEEVDPRFGVQKRLVPTGPNPLH 130
           P  + P  E+DPR+GV KRLVP+GPNPLH
Sbjct: 91  PLLSPPPPEIDPRYGVDKRLVPSGPNPLH 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,906,420
Number of extensions: 49896
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)