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Os02g0320100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.61 (0.0118) R2 : 0.623
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.844 (0.0308) R2dC : 0.622 R2C : 0.614
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0711 (0.0248) R2dN8 : 0.00879 R2N8 : 0.00123
σ : 0.222
deviance : 22.53
__
_____
C
peak time of C : 17.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.7 0.203 9.61 0.18 0.858 0.0615 -0.989 -1.03 0.106 17.7 79.91 840 -- --
20.64 0.212 9.6 0.0784 0.87 0.113 -0.756 -- 0.12 17.6 75.08 3426 -- --
20.46 0.211 9.61 0.192 0.85 0.0667 -- -1.08 0.0971 17.7 78.14 1131 -- --
22.11 0.219 9.6 0.0814 0.857 0.119 -- -- 0.121 17.7 73.45 3438 -- --
38.61 0.289 9.6 0.0885 -- -0.684 -- 0.483 0.0368 -- 71 354 -- --
20.78 0.214 9.6 0.0905 0.849 -- -0.803 -- 0.0852 17.5 -- -- -- --
22.3 0.221 9.61 0.0926 0.846 -- -- -- 0.0814 17.7 -- -- -- --
38.76 0.29 9.61 0.117 -- -0.68 -- -- 0.0098 -- 70.82 357 -- --
22.15 0.219 9.6 -- 0.869 0.181 -- -- 0.0973 17.8 55.99 3448 -- --
59.41 0.36 9.59 0.0658 -- -- -- -- 0.0612 -- -- -- -- --
22.53 0.222 9.61 -- 0.844 -- -- -- 0.0711 17.7 -- -- -- --
39.09 0.291 9.61 -- -- -0.68 -- -- -0.00341 -- 70 353 -- --
59.53 0.36 9.6 -- -- -- -- -- 0.0539 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.74 wind 7.0 90 < th dose independent rect. 9 18
2 16.81 wind 7.0 270 < th dose independent rect. 17 9
4 16.84 wind 9.0 90 < th dose dependent rect. 17 10
7 16.92 radiation 40.0 90 < th dose independent rect. 3 6
8 16.94 humidity 60.0 90 > th dose independent rect. 3 6
9 16.95 temperature 15.0 270 > th dose independent rect. 2 15
10 16.96 precipitation 0.1 90 < th dose independent rect. 3 6
11 16.96 precipitation 0.1 90 < th dose dependent rect. 3 6
12 16.96 radiation 40.0 90 < th dose dependent rect. 9 18
13 16.97 wind 9.0 90 < th dose independent rect. 3 6
14 16.97 temperature 10.0 90 > th dose independent rect. 3 6
17 16.97 atmosphere 995.0 90 > th dose independent rect. 3 6
18 16.97 atmosphere 1015.0 90 < th dose independent rect. 3 6
19 16.97 precipitation 0.1 270 < th dose independent rect. 17 9
20 16.97 temperature 10.0 90 > th dose independent rect. 9 18
21 16.97 precipitation 0.1 270 < th dose dependent rect. 17 9
23 16.99 wind 7.0 270 < th dose independent rect. 7 19
27 17.02 radiation 40.0 90 < th dose independent rect. 9 18
30 17.03 temperature 30.0 90 < th dose independent rect. 3 6
35 17.09 temperature 10.0 270 > th dose independent rect. 17 9
36 17.09 radiation 20.0 270 < th dose independent rect. 17 9
41 17.09 atmosphere 1015.0 270 < th dose independent rect. 2 15
43 17.10 precipitation 0.1 270 < th dose independent rect. 2 15
45 17.10 precipitation 0.1 270 < th dose dependent rect. 2 15
48 17.13 radiation 40.0 270 < th dose dependent rect. 17 9
50 17.14 precipitation 0.1 90 < th dose independent rect. 9 18
52 17.14 precipitation 0.1 90 < th dose dependent rect. 9 18
56 17.16 wind 7.0 270 < th dose independent rect. 6 21
60 17.18 wind 9.0 270 < th dose independent rect. 2 15
72 17.21 atmosphere 995.0 90 > th dose independent rect. 9 18
77 17.22 humidity 50.0 270 > th dose independent rect. 17 9
78 17.22 atmosphere 1000.0 10 > th dose dependent rect. 3 6
79 17.22 wind 9.0 90 < th dose dependent rect. 9 18
80 17.23 atmosphere 995.0 270 > th dose independent rect. 2 15
81 17.24 precipitation 0.1 270 < th dose independent rect. 1 7
92 17.24 precipitation 0.1 270 < th dose dependent rect. 1 7
97 17.25 wind 7.0 270 < th dose independent rect. 1 7
98 17.25 humidity 70.0 270 > th dose independent rect. 1 7
106 17.26 temperature 10.0 270 > th dose independent rect. 1 7
108 17.26 temperature 30.0 270 < th dose independent rect. 1 7
109 17.26 humidity 50.0 270 > th dose independent rect. 1 7
111 17.26 atmosphere 995.0 270 > th dose independent rect. 1 7
112 17.26 atmosphere 1015.0 270 < th dose independent rect. 1 7
113 17.26 radiation 30.0 270 < th dose independent rect. 1 7
117 17.26 wind 9.0 90 < th dose dependent rect. 3 6
132 17.27 temperature 10.0 270 > th dose independent rect. 7 19
135 17.28 atmosphere 995.0 270 > th dose independent rect. 17 9
137 17.28 temperature 15.0 270 > th dose independent rect. 1 20
138 17.28 radiation 40.0 270 < th dose dependent rect. 2 5
147 17.30 wind 5.0 270 < th dose independent rect. 21 4
168 17.32 radiation 40.0 270 < th dose independent rect. 9 16
172 17.33 wind 1.0 270 > th dose independent rect. 1 6
175 17.34 temperature 10.0 1440 > th dose independent rect. 4 6
178 17.34 atmosphere 995.0 1440 > th dose independent rect. 4 6
179 17.34 atmosphere 1015.0 1440 < th dose independent rect. 4 6
183 17.34 temperature 10.0 1440 > th dose independent rect. 10 18
186 17.34 precipitation 0.1 270 < th dose independent rect. 7 19
187 17.34 radiation 40.0 270 < th dose dependent rect. 1 7
188 17.34 precipitation 0.1 270 < th dose dependent rect. 7 19
189 17.35 wind 5.0 90 < th dose independent rect. 21 6
207 17.37 radiation 40.0 270 < th dose independent rect. 7 19
211 17.38 humidity 60.0 270 > th dose independent rect. 6 8
222 17.41 wind 9.0 90 < th dose dependent rect. 21 6
229 17.42 radiation 40.0 270 < th dose dependent rect. 7 19
276 17.46 wind 9.0 270 < th dose dependent rect. 21 4
299 17.48 atmosphere 1005.0 30 > th dose independent rect. 3 6
305 17.48 radiation 30.0 270 < th dose dependent rect. 3 3
315 17.49 temperature 30.0 270 < th dose independent rect. 19 7
341 17.50 precipitation 0.1 270 < th dose independent rect. 21 4
352 17.50 precipitation 0.1 270 < th dose dependent rect. 21 4
353 17.50 humidity 50.0 270 > th dose dependent rect. 2 5
364 17.51 wind 1.0 270 > th dose independent rect. 13 17
368 17.51 temperature 10.0 90 > th dose dependent rect. 3 6
385 17.52 temperature 10.0 270 > th dose independent rect. 6 8
387 17.52 atmosphere 995.0 270 > th dose independent rect. 6 8
388 17.52 atmosphere 1015.0 270 < th dose independent rect. 6 8
392 17.52 temperature 10.0 270 > th dose independent rect. 14 16
406 17.53 temperature 10.0 90 > th dose independent rect. 21 6
407 17.53 temperature 30.0 90 < th dose independent rect. 21 6
408 17.53 humidity 50.0 90 > th dose independent rect. 21 6
411 17.53 atmosphere 995.0 90 > th dose independent rect. 21 6
413 17.53 radiation 1.0 90 < th dose independent rect. 21 6
419 17.53 precipitation 0.1 270 < th dose independent rect. 6 8
425 17.53 radiation 1.0 90 < th dose dependent rect. 21 6
432 17.53 precipitation 0.1 270 < th dose dependent rect. 6 8
454 17.54 wind 9.0 10 < th dose independent rect. 9 18
480 17.55 atmosphere 1015.0 270 < th dose independent rect. 1 20
481 17.55 atmosphere 1000.0 270 > th dose dependent rect. 1 5
485 17.56 temperature 10.0 270 > th dose independent rect. 21 4
486 17.56 temperature 30.0 270 < th dose independent rect. 21 4
487 17.56 humidity 50.0 270 > th dose independent rect. 21 4
490 17.56 atmosphere 995.0 270 > th dose independent rect. 21 4
491 17.56 radiation 1.0 270 < th dose independent rect. 21 4
517 17.56 wind 9.0 270 < th dose independent rect. 6 8
521 17.56 atmosphere 995.0 270 > th dose independent rect. 14 16
522 17.56 precipitation 0.1 270 < th dose independent rect. 14 16
531 17.56 radiation 1.0 270 < th dose dependent rect. 21 4
548 17.56 precipitation 0.1 270 < th dose dependent rect. 14 16
557 17.57 humidity 50.0 270 > th dose dependent rect. 1 7
604 17.59 radiation 1.0 270 < th dose dependent rect. 6 20
646 17.61 radiation 40.0 270 < th dose independent rect. 15 15
650 17.61 precipitation 0.1 270 < th dose independent rect. 1 20
655 17.61 precipitation 0.1 270 < th dose dependent rect. 1 20
666 17.62 wind 1.0 270 > th dose independent rect. 17 9
675 17.62 radiation 1.0 270 < th dose independent rect. 8 18
679 17.62 temperature 10.0 270 > th dose dependent rect. 21 4
713 17.63 temperature 30.0 270 < th dose independent rect. 6 7
720 17.63 temperature 15.0 270 > th dose independent rect. 11 10
739 17.63 radiation 1.0 270 < th dose dependent rect. 8 18
751 17.64 humidity 50.0 270 > th dose independent rect. 2 16
754 17.64 humidity 50.0 10 > th dose independent rect. 9 18
781 17.65 wind 9.0 270 < th dose independent rect. 14 16
805 17.66 wind 1.0 270 > th dose independent rect. 2 15
810 17.66 humidity 50.0 270 > th dose dependent rect. 3 3
818 17.67 wind 1.0 270 > th dose independent rect. 3 2
828 17.67 humidity 50.0 270 > th dose independent rect. 14 16
846 17.68 wind 9.0 270 < th dose independent rect. 1 20
856 17.69 humidity 50.0 10 > th dose independent rect. 9 6
862 17.69 atmosphere 1005.0 270 > th dose dependent rect. 3 2
896 17.70 wind 1.0 270 > th dose independent rect. 8 17
900 17.70 wind 9.0 270 < th dose dependent rect. 3 3
903 17.70 radiation 1.0 1440 < th dose dependent rect. 21 7
910 17.71 atmosphere 1005.0 270 > th dose independent rect. 3 2
911 17.71 atmosphere 1005.0 270 > th dose independent rect. 2 4
941 17.71 radiation 40.0 270 < th dose dependent rect. 15 15
964 17.73 humidity 70.0 4320 > th dose independent rect. 22 6
988 17.74 atmosphere 1015.0 270 < th dose independent rect. 13 17