BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0320100 Os02g0320100|AK103173
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66180.1 | chr5:26448952-26450919 FORWARD LENGTH=396 388 e-108
AT1G06560.1 | chr1:2007660-2011824 FORWARD LENGTH=600 65 5e-11
AT5G26180.1 | chr5:9149253-9152595 FORWARD LENGTH=568 57 2e-08
AT3G13180.1 | chr3:4236326-4239966 REVERSE LENGTH=524 49 3e-06
>AT5G66180.1 | chr5:26448952-26450919 FORWARD LENGTH=396
Length = 395
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/320 (58%), Positives = 234/320 (73%), Gaps = 7/320 (2%)
Query: 11 LPPAFLEFLQENGLDPMMYSMVDTIPRYIRLKPGMEPHIPEIQSELTCHLNKVSWLPDFY 70
LP +FL FL+ NGLDP +Y+ D+IPRY+RLKPG E EI+SE+ C L KV+WLP FY
Sbjct: 9 LPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVNWLPGFY 68
Query: 71 AIPPQVQIASSMAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLG 130
+IPP V IA + AYQQG +YGIDAASGAAV AL + PG+HVLDLCAAPGAKLCM+ D+LG
Sbjct: 69 SIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCMMLDLLG 128
Query: 131 GRGSLTGVDVAKHRLAACRTMLQKYSLGDRCRLFVADGTSFSILPVNSSLGNGEGSTCHK 190
+G+ TGVDVA+HRLAACRTML KY L +R RLF+ADGT+FS+ P N +C
Sbjct: 129 QKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTR----NLPCESCVD 184
Query: 191 DNGSTLSEWTSKRSWKDRQKSKKARMAGSPHLTSTSEPELIYYGKHSGLVGLRKCDAIRP 250
D+ T +WTS+R +K+R++ KAR L + E+I+YG+ SG++GL+K + R
Sbjct: 185 DHEDTFKQWTSRRPYKERKQEAKARKNSV--LPQNGQAEIIFYGQGSGVIGLKKNELYRS 242
Query: 251 SADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERTD-DXXXXXXX 309
++ + GYDKVLVDAECTHDGSIKHIQKFE WGWKTL+RRVLDAERTD +
Sbjct: 243 LDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLN 302
Query: 310 XXTNGFKLLKTGGSLVYSTC 329
NGF+LLK G+LVYSTC
Sbjct: 303 LLRNGFRLLKEAGTLVYSTC 322
>AT1G06560.1 | chr1:2007660-2011824 FORWARD LENGTH=600
Length = 599
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 58/272 (21%)
Query: 86 QGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKHRL 145
+G+I+ + S ALD Q GE +LD+CAAPG K +A ++ G + D + +++
Sbjct: 275 EGEIFLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKV 334
Query: 146 AACRTMLQK--YSLGDRCRLFVADGTSFSILP--VNSS--LGNGEGS---TCHKDNGST- 195
+ + + ++ C+L D LP +N S L NG+ S T H + S
Sbjct: 335 LVVQNLSAEMGFTCITTCKL---DALKSVCLPTTLNESTILINGDNSSSMTSHSELSSNE 391
Query: 196 -LSEWTSKRSWKDRQKSKKARMAGSPHLTSTSEPE------LIYYGKHSGLV----GLRK 244
++ TS+RS D+ K ST +P Y K+ G + G +
Sbjct: 392 EMTSVTSRRSEADKSCEKN---------DSTEQPNGGDNVSQAYIRKNKGRLKNGRGRTQ 442
Query: 245 CDAIRPSADDEAQTSGYDKVLVDAECTHDG-------SIKHIQKFEFWGWKTLDRRVLDA 297
C R + +D+VL+DA C+ G ++ + GW R++LD
Sbjct: 443 CQGGRAGKSQGFPPNSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGW--YQRKMLD- 499
Query: 298 ERTDDXXXXXXXXXTNGFKLLKTGGSLVYSTC 329
+L++ GG LVYSTC
Sbjct: 500 ---------------QAVQLVRVGGILVYSTC 516
>AT5G26180.1 | chr5:9149253-9152595 FORWARD LENGTH=568
Length = 567
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 36 PRYIR---LKPGMEPHIPEIQSELTCHLNKVSWLPDFYAIPPQVQIASSMAYQQGKIYGI 92
PRY+R LK ++ + E++ T + K +PD +PP + + G+I+
Sbjct: 232 PRYVRVNTLKMDVDSAVQELEKHYT--VQKDETVPDLLVLPPGSDLHAHRLVANGRIFLQ 289
Query: 93 DAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKHRL 145
AS AL Q G VLD C+APG K LA ++ G+G + ++ + R+
Sbjct: 290 GKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERV 342
>AT3G13180.1 | chr3:4236326-4239966 REVERSE LENGTH=524
Length = 523
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 51 EIQSELTCHLNKVSWLPDFYAIPPQVQ-IASSMAYQQGKIYGIDAASGAAVLALDVQPGE 109
++ EL+ HL +F I +Q + + ++G D ++G V + QPGE
Sbjct: 279 KVPHELSLHLE------EFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGE 332
Query: 110 HVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKHRL 145
++D CAAPG K +A L G+G + +DV + RL
Sbjct: 333 RIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRL 368
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,428,944
Number of extensions: 306326
Number of successful extensions: 757
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)