Os02g0315400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0315400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.89 | 0.293 | 10.8 | 0.857 | 0.481 | 0.64 | 0.235 | 0.218 | 0.224 | 15.7 | 20.5 | 1176 | -- | -- |
| 39.02 | 0.291 | 10.8 | 0.818 | 0.486 | 0.616 | 0.182 | -- | 0.22 | 15.7 | 20.6 | 1164 | -- | -- |
| 39.05 | 0.291 | 10.8 | 0.85 | 0.48 | 0.627 | -- | 0.163 | 0.22 | 15.5 | 20.5 | 1065 | -- | -- |
| 39.1 | 0.291 | 10.8 | 0.832 | 0.483 | 0.599 | -- | -- | 0.224 | 15.5 | 20.56 | 1065 | -- | -- |
| 50.77 | 0.332 | 10.8 | 0.843 | -- | 0.668 | -- | 0.285 | 0.217 | -- | 20.31 | 1793 | -- | -- |
| 48.17 | 0.325 | 10.8 | 1.07 | 0.441 | -- | 0.367 | -- | 0.354 | 16.1 | -- | -- | -- | -- |
| 48.55 | 0.326 | 10.8 | 1.07 | 0.443 | -- | -- | -- | 0.356 | 16 | -- | -- | -- | -- |
| 50.64 | 0.331 | 10.8 | 0.764 | -- | 0.622 | -- | -- | 0.193 | -- | 20.56 | 1967 | -- | -- |
| 44.37 | 0.31 | 10.9 | -- | 0.398 | 0.909 | -- | -- | 0.0106 | 16.2 | 18.6 | 47390 | -- | -- |
| 59.25 | 0.36 | 10.8 | 1.05 | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
| 78.72 | 0.415 | 10.8 | -- | 0.422 | -- | -- | -- | 0.237 | 16 | -- | -- | -- | -- |
| 54.95 | 0.345 | 10.8 | -- | -- | 0.971 | -- | -- | 0.0209 | -- | 17.65 | 47520 | -- | -- |
| 88.43 | 0.439 | 10.8 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 7 | 38.59 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 20 |
| 11 | 38.69 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 11 |
| 26 | 38.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 34 | 38.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 44 | 38.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 61 | 38.96 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 84 | 39.01 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 86 | 39.02 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 135 | 39.12 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 147 | 39.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 208 | 39.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 228 | 39.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 289 | 39.32 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 309 | 39.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 315 | 39.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 325 | 39.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 370 | 39.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 438 | 39.44 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 464 | 39.46 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 486 | 39.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 487 | 39.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 509 | 39.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 510 | 39.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 513 | 39.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 548 | 39.53 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 596 | 39.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 608 | 39.56 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 681 | 39.61 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 717 | 39.63 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 823 | 39.66 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 908 | 39.71 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |