BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0315400 Os02g0315400|AK071564
         (177 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29870.1  | chr4:14606012-14606530 FORWARD LENGTH=173          167   3e-42
AT2G19340.1  | chr2:8374313-8375795 REVERSE LENGTH=201            147   4e-36

>AT4G29870.1 | chr4:14606012-14606530 FORWARD LENGTH=173
          Length = 172

 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 24  SIDPLFHVLRVXXXXXXXXXXXXXXXXXNLALPSPMTVFALILLTYFAVVSGLVYDVIVE 83
           SIDP+FH+LR+                 +  LPSPMTVF+LILLTYF VVSG VYDVIVE
Sbjct: 20  SIDPIFHILRIIPFSFLRPPRLRLKLP-SFTLPSPMTVFSLILLTYFLVVSGFVYDVIVE 78

Query: 84  PPGIGSVQDPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVXXXXXXXLLDLAVDRNRPR 143
           PPGIGS QDP TG+VRPVVF+ GRVNGQYIIEGLSSG MFV       +LDLA+D+NR +
Sbjct: 79  PPGIGSTQDPITGSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIMLDLALDKNRAK 138

Query: 144 SLRVSFGGSGXXXXXXXXXXXXLFLRIKIPGYL 176
           S++ S+  +G            LF+RIKIPGYL
Sbjct: 139 SVKASYATAGVSSIVIAYVMSMLFIRIKIPGYL 171



>AT2G19340.1 | chr2:8374313-8375795 REVERSE LENGTH=201
          Length = 200

 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 1/130 (0%)

Query: 24  SIDPLFHVLRVXXXXXXXXXXXXXXXXXNLALPSPMTVFALILLTYFAVVSGLVYDVIVE 83
           S+DP+FH+LR+                 +  LPSPMTV+ALILLTYF VVSG VYDVIVE
Sbjct: 21  SMDPIFHLLRIVPFSFLRPPRLRLKIP-SFTLPSPMTVYALILLTYFLVVSGFVYDVIVE 79

Query: 84  PPGIGSVQDPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVXXXXXXXLLDLAVDRNRPR 143
           PPGIGS QDP TG +RPVVF+ GRVNGQYIIEGLSSG MFV       +LDLA+D+N+ +
Sbjct: 80  PPGIGSTQDPTTGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAK 139

Query: 144 SLRVSFGGSG 153
           S++ S+  +G
Sbjct: 140 SVKASYAVAG 149



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.148    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,478,458
Number of extensions: 81110
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)