FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0309000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (--) R2 : -0.00194
β1 : 0.243 (--) R2dD : 0.0086 R2D : 0.00679
β2 : 0.239 (--) R2dC : -0.00572 R2C : -0.00628
β3 : -0.403 (--) R2dE : -- R2E : --
β4 : 0.592 (--) R2dD*C : -5.98e-05 R2D*C : -0.000884
β5 : -0.676 (--) R2dD*E : -- R2D*E : --
γ1 : 0.0809 (--) R2dN8 : -0.00249 R2N8 : -0.00388
σ : 0.853
deviance : 329.22
__
_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 4
memory length : 6
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.22 0.853 3.03 0.243 0.239 -0.403 0.592 -0.676 0.0809 20.7 4 6 -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
336.46 0.86 3.04 0.299 0.0375 -- 0.307 -- -0.0213 21.4 -- -- -- --
336.74 0.859 3.04 0.289 0.052 -- -- -- -0.0208 18.7 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
336.88 0.858 3.04 0.288 -- -- -- -- -0.0218 -- -- -- -- --
338.95 0.861 3.05 -- 0.0486 -- -- -- -0.053 19 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
339.07 0.859 3.05 -- -- -- -- -- -0.0538 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.93 wind 1.0 10 < th dose independent rect. 22 1
3 318.93 wind 1.0 10 < th dose dependent rect. 22 1
5 320.06 atmosphere 1005.0 90 > th dose dependent rect. 12 1
6 320.08 precipitation 0.1 90 > th dose independent rect. 23 2
9 320.08 precipitation 0.1 90 > th dose dependent rect. 23 2
14 321.10 temperature 10.0 1440 > th dose independent rect. 13 1
18 321.10 atmosphere 995.0 1440 > th dose independent rect. 13 1
21 321.10 temperature 10.0 1440 > th dose independent rect. 14 23
24 321.16 humidity 60.0 90 > th dose independent rect. 12 1
28 321.34 wind 3.0 30 > th dose independent rect. 12 1
32 321.62 atmosphere 1005.0 90 > th dose independent rect. 12 1
34 321.66 wind 3.0 30 > th dose dependent rect. 12 1
37 321.92 humidity 80.0 30 < th dose independent rect. 12 1
44 322.00 radiation 40.0 30 > th dose independent rect. 12 1
46 322.04 humidity 50.0 30 > th dose dependent rect. 12 1
47 322.05 wind 9.0 30 < th dose independent rect. 13 23
48 322.06 radiation 30.0 30 > th dose dependent rect. 12 1
52 322.15 radiation 10.0 30 > th dose dependent rect. 12 1
54 322.18 radiation 10.0 30 > th dose independent rect. 12 1
58 322.25 temperature 20.0 30 > th dose dependent rect. 12 1
61 322.28 wind 7.0 30 < th dose independent rect. 12 1
67 322.36 temperature 20.0 30 > th dose independent rect. 12 1
70 322.41 temperature 10.0 30 > th dose independent rect. 12 1
72 322.41 atmosphere 995.0 30 > th dose independent rect. 12 1
73 322.41 atmosphere 1015.0 30 < th dose independent rect. 12 1
75 322.41 precipitation 0.1 30 < th dose independent rect. 12 1
76 322.41 temperature 10.0 30 > th dose independent rect. 13 23
77 322.41 precipitation 0.1 30 < th dose dependent rect. 12 1
79 322.64 temperature 30.0 30 < th dose independent rect. 12 1
87 322.69 wind 5.0 10 > th dose independent rect. 22 3
89 322.73 wind 5.0 10 > th dose independent rect. 22 8
103 322.91 atmosphere 995.0 4320 > th dose independent rect. 2 8
109 322.95 precipitation 0.1 1440 > th dose independent rect. 22 1
111 322.95 precipitation 0.1 1440 > th dose dependent rect. 22 1
112 322.95 wind 5.0 30 > th dose dependent rect. 24 6
118 322.99 wind 5.0 30 > th dose dependent rect. 24 4
128 323.10 wind 9.0 30 < th dose dependent rect. 12 1
135 323.13 wind 5.0 10 > th dose dependent rect. 24 2
142 323.16 atmosphere 1015.0 30 < th dose dependent rect. 12 1
156 323.32 humidity 90.0 30 < th dose dependent rect. 12 1
162 323.51 wind 5.0 10 > th dose dependent rect. 22 3
163 323.55 radiation 10.0 1440 < th dose independent rect. 18 6
180 323.97 wind 5.0 10 > th dose dependent rect. 22 8
182 323.99 wind 5.0 10 > th dose dependent rect. 22 6
229 324.69 atmosphere 1010.0 720 < th dose independent rect. 24 1
232 324.70 atmosphere 1005.0 30 > th dose dependent rect. 12 5
244 324.89 atmosphere 1010.0 30 < th dose independent rect. 17 19
253 325.10 atmosphere 1010.0 30 < th dose independent rect. 14 22
255 325.12 atmosphere 995.0 4320 > th dose independent rect. 4 6
273 325.27 atmosphere 1000.0 720 > th dose independent rect. 17 8
295 325.57 radiation 20.0 720 < th dose independent rect. 17 8
319 325.79 atmosphere 1010.0 1440 > th dose independent rect. 24 1
320 325.79 humidity 50.0 10 > th dose independent rect. 17 16
323 325.82 temperature 30.0 10 < th dose independent rect. 17 23
344 325.94 atmosphere 1010.0 1440 < th dose independent rect. 24 3
353 326.01 temperature 10.0 43200 > th dose independent rect. 10 8
356 326.02 precipitation 0.1 10 < th dose independent rect. 13 23
357 326.02 precipitation 0.1 10 < th dose dependent rect. 13 23
370 326.16 atmosphere 1010.0 90 < th dose independent rect. 17 16
372 326.16 temperature 10.0 30 > th dose dependent rect. 13 23
375 326.24 atmosphere 1010.0 30 < th dose independent rect. 1 11
376 326.26 humidity 50.0 30 > th dose independent rect. 13 23
380 326.33 atmosphere 995.0 4320 > th dose independent rect. 1 5
384 326.35 wind 3.0 1440 > th dose independent rect. 3 2
390 326.38 humidity 60.0 10 > th dose independent rect. 23 18
401 326.45 wind 7.0 10 < th dose independent rect. 1 11
402 326.45 radiation 40.0 30 > th dose dependent rect. 12 23
409 326.51 wind 5.0 270 < th dose independent rect. 17 1
413 326.53 wind 3.0 1440 > th dose dependent rect. 3 2
415 326.54 wind 5.0 30 < th dose independent rect. 17 16
420 326.61 wind 9.0 270 < th dose dependent rect. 17 1
422 326.62 wind 3.0 1440 < th dose independent rect. 3 2
424 326.65 humidity 50.0 10 > th dose independent rect. 17 6
433 326.75 temperature 10.0 1440 > th dose independent rect. 10 8
436 326.75 temperature 10.0 1440 > th dose independent rect. 18 16
445 326.77 humidity 60.0 30 > th dose independent rect. 12 5
447 326.79 atmosphere 995.0 4320 > th dose independent rect. 19 15
448 326.79 temperature 10.0 720 > th dose dependent rect. 24 1
450 326.81 wind 9.0 720 < th dose independent rect. 13 23
467 326.97 humidity 60.0 10 > th dose independent rect. 9 8
471 326.98 radiation 40.0 720 < th dose dependent rect. 17 8
482 327.06 temperature 25.0 90 < th dose independent rect. 22 1
487 327.07 temperature 25.0 720 < th dose independent rect. 22 1
504 327.20 atmosphere 1000.0 720 > th dose independent rect. 13 7
511 327.22 radiation 10.0 270 < th dose independent rect. 17 1
512 327.22 radiation 20.0 270 < th dose dependent rect. 17 1
524 327.29 humidity 50.0 270 > th dose independent rect. 17 1
527 327.29 wind 7.0 720 < th dose independent rect. 24 18
540 327.34 radiation 10.0 30 < th dose independent rect. 17 6
545 327.36 atmosphere 995.0 270 > th dose independent rect. 17 1
550 327.39 temperature 20.0 90 > th dose dependent rect. 17 16
552 327.40 atmosphere 1010.0 10 < th dose independent rect. 4 8
557 327.43 temperature 25.0 90 < th dose independent rect. 22 18
561 327.48 wind 3.0 10 > th dose dependent rect. 16 1
564 327.48 wind 9.0 30 < th dose dependent rect. 17 16
565 327.49 precipitation 0.1 10 < th dose independent rect. 1 11
566 327.49 precipitation 0.1 10 < th dose dependent rect. 1 11
576 327.54 wind 7.0 720 < th dose independent rect. 10 8
579 327.56 wind 5.0 10 > th dose independent rect. 16 1
589 327.59 precipitation 0.1 270 < th dose independent rect. 17 1
591 327.59 precipitation 0.1 270 < th dose dependent rect. 17 1
610 327.69 wind 7.0 720 < th dose independent rect. 24 16
617 327.72 temperature 20.0 270 > th dose independent rect. 17 1
623 327.73 wind 7.0 1440 < th dose dependent rect. 3 2
631 327.76 temperature 10.0 270 > th dose independent rect. 17 1
633 327.76 atmosphere 1010.0 270 < th dose independent rect. 17 1
638 327.76 temperature 10.0 270 > th dose independent rect. 18 23
640 327.78 temperature 10.0 1440 > th dose independent rect. 18 6
643 327.78 humidity 50.0 1440 > th dose independent rect. 18 6
657 327.78 temperature 10.0 1440 > th dose independent rect. 24 18
672 327.84 temperature 25.0 720 > th dose independent rect. 17 19
677 327.87 wind 7.0 720 < th dose independent rect. 20 16
679 327.88 atmosphere 1005.0 30 > th dose independent rect. 12 5
681 327.88 atmosphere 995.0 30 > th dose independent rect. 13 23
685 327.91 wind 1.0 270 > th dose independent rect. 17 1
687 327.91 atmosphere 995.0 10 > th dose independent rect. 12 13
695 327.92 radiation 10.0 10 < th dose dependent rect. 17 6
701 327.94 wind 5.0 10 > th dose dependent rect. 20 10
705 327.95 atmosphere 995.0 30 > th dose dependent rect. 9 8
716 327.98 wind 5.0 10 > th dose independent rect. 20 10
723 328.00 atmosphere 1000.0 720 > th dose independent rect. 13 16
729 328.03 temperature 15.0 10 > th dose independent rect. 12 13
733 328.05 humidity 80.0 720 < th dose independent rect. 12 1
743 328.07 temperature 25.0 90 < th dose independent rect. 22 13
753 328.10 precipitation 0.1 10 < th dose independent rect. 12 13
754 328.10 precipitation 0.1 10 < th dose dependent rect. 12 13
757 328.12 humidity 90.0 10 < th dose independent rect. 16 1
763 328.13 temperature 10.0 10 > th dose independent rect. 1 11
765 328.13 atmosphere 995.0 10 > th dose independent rect. 1 11
769 328.14 humidity 60.0 10 > th dose independent rect. 23 15
798 328.16 radiation 40.0 4320 < th dose independent rect. 16 8
821 328.19 humidity 50.0 1440 > th dose independent rect. 18 15
830 328.20 wind 9.0 10 < th dose independent rect. 12 13
836 328.23 wind 9.0 4320 > th dose independent rect. 23 1
837 328.23 atmosphere 995.0 4320 < th dose independent rect. 1 1
842 328.23 atmosphere 995.0 4320 < th dose independent rect. 21 1
990 328.23 wind 9.0 4320 > th dose dependent rect. 23 1
991 328.23 atmosphere 995.0 4320 < th dose dependent rect. 1 1
996 328.23 atmosphere 995.0 4320 < th dose dependent rect. 21 1