BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0309000 Os02g0309000|Os02g0309000
         (820 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1  | chrM:89617-90054 REVERSE LENGTH=146                114   2e-25
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               94   4e-19

>ATMG00300.1 | chrM:89617-90054 REVERSE LENGTH=146
          Length = 145

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 81/129 (62%), Gaps = 9/129 (6%)

Query: 383 SCGDGILKITKGSLVVMKADIKYANLYHLRGTTILG--NVAAVSDSLSNSDATNLWHMRL 440
           SC +G+LK+ KG   ++K + ++ +LY L+G+   G  N+A  +      D T LWH RL
Sbjct: 23  SCSEGVLKVLKGCRTILKGN-RHDSLYILQGSVETGESNLAETAK-----DETRLWHSRL 76

Query: 441 GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 500
            HMS+ G+  L K+G LD   +  LKFCE CI+GK  RV F+T  HTT+  LDYVHSDLW
Sbjct: 77  AHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLW 136

Query: 501 G-PARKTSF 508
           G P+   SF
Sbjct: 137 GAPSVPLSF 145



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 54/83 (65%)

Query: 577 MNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD 636
           MNRTII K R ML   GLPK F A+A +TA ++IN+ PS AI+   P EVW  S   YS 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 637 LRVFGCTAYAHVDNDKLEPRAIK 659
           LR FGC AY H D  KL+PRA K
Sbjct: 61  LRRFGCVAYIHCDEGKLKPRAKK 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,836,043
Number of extensions: 759402
Number of successful extensions: 2013
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2012
Number of HSP's successfully gapped: 2
Length of query: 820
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 713
Effective length of database: 8,173,057
Effective search space: 5827389641
Effective search space used: 5827389641
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)