Os02g0307000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanylate-binding protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0307000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Guanylate-binding protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.33 | 0.227 | 12.9 | 0.899 | 0.528 | 0.393 | -0.262 | 1.07 | 0.39 | 17 | 21.5 | 1849 | -- | -- |
| 25.6 | 0.237 | 12.9 | 0.686 | 0.509 | 0.247 | -0.0673 | -- | 0.351 | 17.7 | 21.8 | 1986 | -- | -- |
| 23.4 | 0.225 | 12.9 | 0.905 | 0.528 | 0.375 | -- | 1.03 | 0.388 | 16.9 | 21.64 | 2006 | -- | -- |
| 25.62 | 0.237 | 12.9 | 0.686 | 0.509 | 0.248 | -- | -- | 0.351 | 17.7 | 21.7 | 1652 | -- | -- |
| 38.01 | 0.287 | 12.9 | 0.887 | -- | 0.41 | -- | 1.11 | 0.374 | -- | 21.45 | 1892 | -- | -- |
| 28.85 | 0.252 | 12.9 | 0.759 | 0.539 | -- | -0.153 | -- | 0.418 | 17.1 | -- | -- | -- | -- |
| 28.91 | 0.252 | 12.9 | 0.758 | 0.538 | -- | -- | -- | 0.418 | 17.1 | -- | -- | -- | -- |
| 36.82 | 0.283 | 12.9 | 0.627 | -- | 0.418 | -- | -- | 0.296 | -- | 21.6 | 308 | -- | -- |
| 28.84 | 0.25 | 13 | -- | 0.542 | 0.615 | -- | -- | 0.184 | 17 | 18.5 | 47520 | -- | -- |
| 44.08 | 0.31 | 12.9 | 0.739 | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
| 44.06 | 0.311 | 12.9 | -- | 0.524 | -- | -- | -- | 0.333 | 17.1 | -- | -- | -- | -- |
| 44.26 | 0.31 | 13 | -- | -- | 0.593 | -- | -- | 0.178 | -- | 18.59 | 47520 | -- | -- |
| 58.48 | 0.357 | 12.9 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.27 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 3 | 23.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 7 | 23.56 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 10 | 23.65 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 12 | 23.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 15 | 23.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 23 | 23.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 24 | 23.90 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 32 | 23.94 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 33 | 23.94 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 37 | 23.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 39 | 23.95 | temperature | 25.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 65 | 24.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 66 | 24.02 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 78 | 24.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 79 | 24.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 83 | 24.07 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 85 | 24.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 93 | 24.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 104 | 24.15 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 108 | 24.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 127 | 24.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 148 | 24.27 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 165 | 24.31 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 168 | 24.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 169 | 24.31 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 175 | 24.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 179 | 24.32 | wind | 3.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 193 | 24.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 233 | 24.41 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 240 | 24.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 12 |
| 253 | 24.44 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 265 | 24.46 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 271 | 24.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 275 | 24.46 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 276 | 24.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 295 | 24.49 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 297 | 24.49 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 318 | 24.51 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 354 | 24.53 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 376 | 24.56 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 379 | 24.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 411 | 24.60 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 413 | 24.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 423 | 24.61 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 440 | 24.62 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 449 | 24.63 | wind | 1.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 471 | 24.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 476 | 24.65 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 482 | 24.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 551 | 24.70 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 557 | 24.70 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 566 | 24.71 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 569 | 24.71 | temperature | 25.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 577 | 24.71 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 612 | 24.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 613 | 24.73 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 615 | 24.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 617 | 24.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 635 | 24.74 | wind | 1.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 703 | 24.77 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 707 | 24.77 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 732 | 24.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 738 | 24.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 749 | 24.80 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 787 | 24.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 788 | 24.82 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 794 | 24.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 865 | 24.85 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 867 | 24.85 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 894 | 24.86 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 895 | 24.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 903 | 24.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 976 | 24.89 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |