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Os02g0297200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.96 (0.0575) R2 : 0.632
β1 : 0.952 (0.207) R2dD : 0.0181 R2D : -0.252
β2 : 1.65 (0.145) R2dC : 0.101 R2C : -0.0654
β3 : -3.64 (0.252) R2dE : 0.203 R2E : -0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.41 (0.132) R2dN8 : 0.828 R2N8 : 0.29
σ : 1.05
deviance : 507.25
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C
peak time of C : 7.36
E
wheather : radiation
threshold : 10.34
memory length : 4168
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.2
open length of G : 17.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
491.43 1.04 5.95 1.23 1.59 -3.58 1.05 4.82 3.44 7.62 10.29 4169 16.2 17.1
506.76 1.05 5.96 0.903 1.62 -3.56 0.78 -- 3.43 7.44 10.29 4168 16.2 17.1
492.18 1.03 5.95 1.3 1.6 -3.6 -- 4.85 3.43 7.39 10.29 4168 16.3 17
507.25 1.05 5.96 0.952 1.65 -3.64 -- -- 3.41 7.36 10.34 4168 16.2 17.1
606.53 1.15 6.02 1.28 -- -3.65 -- 5.04 3.38 -- 10.64 3989 16.3 17.2
712.84 1.25 6.17 0.501 1.81 -- 0.766 -- 2.47 7.79 -- -- -- --
714.22 1.25 6.17 0.518 1.82 -- -- -- 2.47 7.64 -- -- -- --
607.01 1.15 5.99 1.38 -- -4.41 -- -- 3.37 -- 10.44 3891 16.4 19.3
521.12 1.06 5.98 -- 1.74 -3.47 -- -- 3.36 7.28 12.55 5650 16.2 17
891.67 1.4 6.22 0.543 -- -- -- -- 2.49 -- -- -- -- --
721.29 1.26 6.18 -- 1.82 -- -- -- 2.41 7.62 -- -- -- --
621.8 1.16 6.05 -- -- -4.24 -- -- 3.27 -- 12.97 3692 14.4 22.5
899.44 1.4 6.23 -- -- -- -- -- 2.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.43 wind 5.0 43200 > th dose independent rect. 23 12
7 461.43 wind 5.0 43200 < th dose independent rect. 23 12
38 464.22 wind 5.0 43200 > th dose dependent rect. 21 15
48 465.19 wind 5.0 43200 > th dose independent sin 8 NA
67 467.14 wind 5.0 43200 < th dose independent sin 8 NA
73 467.46 wind 5.0 43200 > th dose dependent rect. 24 12
77 467.61 wind 5.0 43200 > th dose dependent rect. 1 10
113 470.14 precipitation 0.1 43200 > th dose independent rect. 7 2
114 470.17 wind 5.0 43200 > th dose dependent sin 8 NA
119 470.41 precipitation 0.1 43200 > th dose dependent rect. 7 2
130 471.25 wind 5.0 43200 > th dose independent rect. 7 2
146 471.87 humidity 90.0 43200 > th dose dependent rect. 9 5
149 472.36 precipitation 0.1 43200 < th dose independent rect. 7 2
150 472.36 precipitation 0.1 43200 < th dose dependent rect. 7 2
155 472.58 wind 5.0 43200 < th dose independent rect. 7 2
165 473.22 temperature 25.0 43200 < th dose dependent rect. 10 1
168 473.33 wind 5.0 43200 > th dose dependent rect. 20 10
186 474.40 wind 5.0 43200 > th dose dependent rect. 7 2
187 474.44 temperature 25.0 43200 < th dose dependent rect. 8 5
204 475.93 wind 5.0 43200 > th dose dependent rect. 5 4
246 477.76 temperature 25.0 43200 > th dose independent rect. 11 1
251 477.88 precipitation 0.1 43200 < th dose independent rect. 4 9
252 477.88 precipitation 0.1 43200 < th dose dependent rect. 4 9
256 477.93 precipitation 0.1 43200 > th dose independent rect. 4 9
269 478.47 precipitation 0.1 43200 > th dose dependent rect. 5 8
283 478.87 temperature 25.0 43200 < th dose independent rect. 11 1
320 479.90 wind 5.0 43200 > th dose independent rect. 10 1
396 481.46 temperature 20.0 43200 > th dose independent rect. 16 13
399 481.53 temperature 20.0 43200 > th dose independent sin 15 NA
405 481.58 wind 5.0 43200 < th dose independent rect. 10 1
415 481.67 temperature 20.0 43200 > th dose independent rect. 12 17
423 481.74 temperature 20.0 43200 > th dose independent rect. 10 19
430 481.79 temperature 20.0 43200 > th dose independent rect. 8 21
436 481.94 temperature 20.0 43200 > th dose independent rect. 19 8
449 482.06 temperature 25.0 43200 < th dose dependent sin 22 NA
451 482.07 temperature 20.0 43200 > th dose independent rect. 3 19
501 482.47 temperature 20.0 43200 > th dose independent rect. 16 17
562 482.75 temperature 20.0 43200 < th dose independent rect. 16 13
611 482.90 temperature 20.0 43200 > th dose independent no NA NA
630 482.98 temperature 20.0 43200 > th dose independent rect. 19 23
637 483.02 temperature 20.0 43200 < th dose independent rect. 12 17
656 483.12 temperature 20.0 43200 < th dose independent rect. 8 21
670 483.23 temperature 20.0 43200 < th dose independent sin 14 NA
728 483.61 temperature 20.0 43200 > th dose independent rect. 16 5
734 483.66 humidity 90.0 43200 > th dose independent rect. 9 5
749 483.76 temperature 20.0 43200 < th dose independent rect. 16 17
783 483.90 temperature 20.0 43200 < th dose independent rect. 2 20
799 483.95 temperature 20.0 43200 < th dose independent rect. 24 22
812 483.99 temperature 20.0 43200 < th dose independent rect. 12 21
855 484.12 temperature 20.0 43200 < th dose independent rect. 2 23
904 484.26 temperature 20.0 43200 < th dose independent no NA NA
925 484.41 temperature 25.0 43200 < th dose dependent rect. 15 1
926 484.42 humidity 90.0 43200 < th dose independent rect. 12 1