Os02g0296800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cobalamin (vitamin B12) biosynthesis CbiX domain containing protein.
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Os02g0296800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cobalamin (vitamin B12) biosynthesis CbiX domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.22 | 0.309 | 10.4 | -1.12 | 0.455 | 1.12 | 0.113 | -0.413 | -0.605 | 21.1 | 23.29 | 691 | -- | -- |
| 43.37 | 0.307 | 10.4 | -1.18 | 0.451 | 1.21 | 0.114 | -- | -0.621 | 20.8 | 23.09 | 567 | -- | -- |
| 43.25 | 0.306 | 10.4 | -1.12 | 0.455 | 1.12 | -- | -0.451 | -0.606 | 21 | 23.23 | 667 | -- | -- |
| 42.57 | 0.304 | 10.4 | -1.03 | 0.406 | 1.19 | -- | -- | -0.583 | 21.2 | 22.3 | 2228 | -- | -- |
| 50.45 | 0.331 | 10.4 | -1.07 | -- | 1.26 | -- | -0.147 | -0.598 | -- | 22.75 | 1624 | -- | -- |
| 61.61 | 0.368 | 10.5 | -1.48 | 0.335 | -- | 0.253 | -- | -0.811 | 21 | -- | -- | -- | -- |
| 61.8 | 0.368 | 10.5 | -1.49 | 0.338 | -- | -- | -- | -0.811 | 20.7 | -- | -- | -- | -- |
| 50.35 | 0.33 | 10.4 | -1.11 | -- | 1.34 | -- | -- | -0.608 | -- | 22.6 | 1619 | -- | -- |
| 51.27 | 0.333 | 10.4 | -- | 0.346 | 1.42 | -- | -- | -0.37 | 20.9 | 19.4 | 47520 | -- | -- |
| 68.26 | 0.386 | 10.4 | -1.49 | -- | -- | -- | -- | -0.813 | -- | -- | -- | -- | -- |
| 120.37 | 0.513 | 10.4 | -- | 0.344 | -- | -- | -- | -0.645 | 20.4 | -- | -- | -- | -- |
| 57.16 | 0.352 | 10.4 | -- | -- | 1.74 | -- | -- | -0.414 | -- | 18.6 | 32493 | -- | -- |
| 126.94 | 0.526 | 10.4 | -- | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 2 | 43.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 3 | 43.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 5 | 43.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 20 | 43.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 23 | 44.00 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 27 | 44.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 28 | 44.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 37 | 44.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 50 | 44.19 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 63 | 44.31 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 75 | 44.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 80 | 44.48 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 20 |
| 89 | 44.57 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 94 | 44.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 107 | 44.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 111 | 44.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 10 |
| 118 | 44.71 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 130 | 44.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 7 |
| 137 | 44.77 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 23 |
| 138 | 44.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 140 | 44.78 | temperature | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 141 | 44.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 148 | 44.79 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 158 | 44.82 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 161 | 44.83 | temperature | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 164 | 44.83 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 175 | 44.86 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 22 |
| 195 | 44.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 215 | 44.92 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 224 | 44.93 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 249 | 44.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 270 | 44.97 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 271 | 44.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 272 | 44.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 286 | 44.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 288 | 44.98 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 341 | 45.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 361 | 45.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 380 | 45.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 399 | 45.05 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 23 |
| 448 | 45.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 477 | 45.10 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 532 | 45.12 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 619 | 45.16 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 626 | 45.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 642 | 45.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 751 | 45.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 752 | 45.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 760 | 45.24 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 772 | 45.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 773 | 45.24 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 782 | 45.25 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 884 | 45.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 889 | 45.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 930 | 45.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 934 | 45.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 986 | 45.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |