BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0296800 Os02g0296800|AK064811
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50170.1  | chr1:18582087-18583514 FORWARD LENGTH=226          157   9e-40

>AT1G50170.1 | chr1:18582087-18583514 FORWARD LENGTH=226
          Length = 225

 Score =  157 bits (398), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 88/108 (81%)

Query: 15  IVDECVQELAEPTIKDAFGKCVQQGASRVIVSPYFLSPGRHWKQDIPALAAEASKEHSNI 74
           IV+    ELAEP+IKDAF  CVQQGA RV+VSP+FL PGRHW  DIP+L A+A+KE S I
Sbjct: 115 IVEPAHMELAEPSIKDAFSLCVQQGAKRVVVSPFFLFPGRHWHTDIPSLTADAAKEFSGI 174

Query: 75  TYVVTAPLGLHELMVDVMNDRIKYCLRHVAGNVEECTVCAGTGKCQLY 122
           +Y++TAPLG H L++DV+NDRI++CL HV G+ +EC VCAGT KC+LY
Sbjct: 175 SYLITAPLGPHNLLLDVVNDRIQHCLSHVEGDADECLVCAGTNKCKLY 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,794,727
Number of extensions: 100520
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)