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Os02g0293400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.36 (0.0161) R2 : 0.701
β1 : 0.919 (0.0606) R2dD : 0.169 R2D : 0.191
β2 : 0.859 (0.048) R2dC : 0.285 R2C : -0.0258
β3 : 1.35 (0.0704) R2dE : 0.365 R2E : 0.189
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.315 (0.0362) R2dN8 : 0.075 R2N8 : 0.0953
σ : 0.298
deviance : 40.97
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C
peak time of C : 6.88
E
wheather : temperature
threshold : 19.57
memory length : 376
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.55 0.299 7.36 0.927 0.833 1.34 -0.56 -0.051 0.316 6.36 19.96 278 -- --
40.47 0.296 7.36 0.925 0.856 1.35 -0.477 -- 0.313 6.59 19.69 329 -- --
40.89 0.298 7.35 1.02 0.859 1.33 -- 0.502 0.347 6.84 19.27 369 -- --
40.97 0.298 7.36 0.919 0.859 1.35 -- -- 0.315 6.88 19.57 376 -- --
57.07 0.352 7.37 0.822 -- 1.09 -- 0.177 0.338 -- 15.56 2933 -- --
71.79 0.397 7.32 1.25 0.421 -- -0.486 -- 0.551 7.93 -- -- -- --
72.28 0.398 7.32 1.24 0.42 -- -- -- 0.553 8.46 -- -- -- --
57.08 0.352 7.38 0.788 -- 1.06 -- -- 0.329 -- 16.1 2933 -- --
59.33 0.359 7.39 -- 0.946 1.88 -- -- 0.163 7.67 16.07 560 -- --
82.13 0.423 7.33 1.24 -- -- -- -- 0.557 -- -- -- -- --
112.73 0.497 7.35 -- 0.426 -- -- -- 0.415 8.25 -- -- -- --
69.48 0.388 7.41 -- -- 1.57 -- -- 0.165 -- 14.41 7451 -- --
122.74 0.517 7.36 -- -- -- -- -- 0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.79 temperature 10 720 > th dose dependent rect. 19 21
14 38.76 temperature 20 270 > th dose dependent rect. 1 22
21 39.11 temperature 30 270 < th dose dependent rect. 6 21
41 39.63 temperature 20 270 > th dose dependent rect. 11 23
64 39.96 temperature 20 30 > th dose dependent rect. 3 17
71 40.01 temperature 10 270 > th dose dependent rect. 10 23
75 40.05 temperature 20 270 > th dose dependent rect. 21 23
101 40.39 temperature 20 720 > th dose dependent sin 7 NA
111 40.56 temperature 20 270 > th dose dependent no NA NA
153 41.06 temperature 10 720 > th dose dependent rect. 2 14
161 41.15 temperature 30 10 < th dose dependent rect. 9 19
178 41.29 temperature 20 30 > th dose dependent no NA NA
211 41.55 temperature 20 10 > th dose dependent rect. 13 23
263 41.86 temperature 20 10 > th dose dependent rect. 23 23
317 42.22 temperature 20 270 > th dose dependent rect. 6 23
330 42.30 temperature 30 720 < th dose dependent rect. 23 20
439 42.87 temperature 30 720 < th dose dependent rect. 16 21
496 43.11 temperature 30 720 < th dose dependent rect. 19 19
521 43.23 temperature 15 1440 > th dose dependent sin 12 NA
541 43.27 temperature 15 1440 > th dose dependent rect. 18 10
548 43.28 temperature 15 1440 > th dose dependent rect. 19 8
562 43.31 temperature 30 1440 < th dose dependent rect. 18 10
573 43.33 temperature 30 1440 < th dose dependent rect. 19 8
575 43.33 temperature 30 1440 < th dose dependent rect. 18 15
605 43.37 temperature 15 1440 > th dose dependent rect. 21 2
606 43.37 temperature 30 1440 < th dose dependent rect. 21 2
615 43.38 temperature 30 1440 < th dose dependent sin 12 NA
734 43.49 temperature 30 10 < th dose dependent rect. 7 23
785 43.55 temperature 30 270 < th dose dependent no NA NA