Os02g0275100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome C biogenesis protein family protein.
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Os02g0275100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome C biogenesis protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.29 | 0.263 | 8.99 | 0.292 | 0.223 | 0.599 | 0.44 | -0.159 | -0.055 | 16.5 | 24.5 | 439 | -- | -- |
| 31.3 | 0.261 | 8.99 | 0.264 | 0.22 | 0.622 | 0.468 | -- | -0.0624 | 16.4 | 24.23 | 427 | -- | -- |
| 31.74 | 0.262 | 8.98 | 0.318 | 0.229 | 0.594 | -- | -0.316 | -0.0465 | 16.9 | 24.5 | 435 | -- | -- |
| 31.87 | 0.263 | 8.99 | 0.271 | 0.231 | 0.628 | -- | -- | -0.0602 | 16.8 | 24.3 | 435 | -- | -- |
| 33.81 | 0.271 | 8.98 | 0.335 | -- | 0.575 | -- | -0.294 | -0.0339 | -- | 25.39 | 1258 | -- | -- |
| 36.73 | 0.284 | 9.02 | 0.105 | 0.172 | -- | 0.492 | -- | -0.178 | 15.9 | -- | -- | -- | -- |
| 37.42 | 0.286 | 9.02 | 0.111 | 0.177 | -- | -- | -- | -0.175 | 16.2 | -- | -- | -- | -- |
| 33.89 | 0.271 | 8.99 | 0.286 | -- | 0.607 | -- | -- | -0.0501 | -- | 25.14 | 1255 | -- | -- |
| 33.59 | 0.27 | 9 | -- | 0.214 | 0.514 | -- | -- | -0.107 | 16.8 | 24.31 | 429 | -- | -- |
| 39.11 | 0.292 | 9.01 | 0.104 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
| 37.74 | 0.287 | 9.02 | -- | 0.175 | -- | -- | -- | -0.187 | 16.3 | -- | -- | -- | -- |
| 35.76 | 0.279 | 9 | -- | -- | 0.468 | -- | -- | -0.103 | -- | 25.3 | 1135 | -- | -- |
| 39.4 | 0.293 | 9.02 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 2 | 30.63 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 4 | 30.68 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 7 | 30.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 24 | 30.94 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 33 | 31.05 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 35 | 31.05 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 48 | 31.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 66 | 31.21 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 70 | 31.22 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 78 | 31.27 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 108 | 31.31 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 110 | 31.32 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 112 | 31.32 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 176 | 31.46 | radiation | 30.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 185 | 31.49 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 186 | 31.49 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 215 | 31.52 | radiation | 40.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 229 | 31.54 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 236 | 31.55 | radiation | 30.0 | 10 | < th | dose independent | rect. | 12 | 23 |
| 289 | 31.61 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 324 | 31.64 | radiation | 1.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 333 | 31.64 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 334 | 31.65 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 361 | 31.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 374 | 31.68 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 445 | 31.73 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 466 | 31.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 474 | 31.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 488 | 31.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 503 | 31.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 504 | 31.76 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 506 | 31.76 | radiation | 40.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 524 | 31.77 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 532 | 31.77 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 544 | 31.77 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 545 | 31.78 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 570 | 31.78 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 599 | 31.79 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 624 | 31.80 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 631 | 31.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 633 | 31.81 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 646 | 31.81 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 653 | 31.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 656 | 31.82 | temperature | 10.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 659 | 31.82 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 661 | 31.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 662 | 31.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 684 | 31.82 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 691 | 31.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 723 | 31.84 | radiation | 1.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 739 | 31.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 747 | 31.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 752 | 31.85 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 774 | 31.86 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 808 | 31.87 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 810 | 31.87 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 828 | 31.87 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 910 | 31.90 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 942 | 31.91 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 947 | 31.91 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 954 | 31.92 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 990 | 31.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 1000 | 31.93 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |