BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0275100 Os02g0275100|J080089G04
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15220.1  | chr1:5240471-5241117 REVERSE LENGTH=160            211   2e-55

>AT1G15220.1 | chr1:5240471-5241117 REVERSE LENGTH=160
          Length = 159

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 119/141 (84%)

Query: 3   TEEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEI 62
           T+E+ K+ Q++++RARNISHNVRCTECGSQSIEDSQADIAILLR+LIR+EI +GK+DKEI
Sbjct: 4   TDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTDKEI 63

Query: 63  YKKLQADYGETILYTPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNVHIMALNLVR 122
           Y KL+ ++GET+LY PKFDLQTAA+WL+PVI          YQKHR R NV IMALNL+R
Sbjct: 64  YSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALNLIR 123

Query: 123 GVPLTPREKETMLDVLTPPPP 143
           GVPLTP+E+ T+LDVL PP P
Sbjct: 124 GVPLTPKERVTILDVLIPPSP 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,196,178
Number of extensions: 112552
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)