Os02g0246300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os02g0246300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.27 | 0.236 | 11 | -0.335 | 0.284 | -0.837 | 0.189 | 0.518 | -0.0936 | 11.2 | 25.13 | 1090 | -- | -- |
| 25.52 | 0.235 | 11 | -0.244 | 0.284 | -0.892 | 0.263 | -- | -0.0718 | 11.2 | 24.6 | 1077 | -- | -- |
| 25.4 | 0.235 | 11 | -0.343 | 0.287 | -0.827 | -- | 0.609 | -0.0958 | 11 | 25.11 | 1071 | -- | -- |
| 25.8 | 0.237 | 11 | -0.237 | 0.284 | -0.893 | -- | -- | -0.0693 | 11 | 24.56 | 1069 | -- | -- |
| 28.64 | 0.249 | 11 | -0.403 | -- | -0.798 | -- | 0.85 | -0.111 | -- | 26.97 | 1516 | -- | -- |
| 36.74 | 0.284 | 10.9 | 0.0158 | 0.2 | -- | 0.272 | -- | 0.113 | 10.9 | -- | -- | -- | -- |
| 37.01 | 0.285 | 10.9 | 0.0259 | 0.202 | -- | -- | -- | 0.113 | 10.4 | -- | -- | -- | -- |
| 28.85 | 0.25 | 11 | -0.334 | -- | -0.817 | -- | -- | -0.0953 | -- | 23.83 | 2887 | -- | -- |
| 27.06 | 0.242 | 11 | -- | 0.278 | -0.781 | -- | -- | -0.0251 | 11 | 24.6 | 1053 | -- | -- |
| 39.5 | 0.294 | 11 | 0.0226 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 37.03 | 0.285 | 10.9 | -- | 0.202 | -- | -- | -- | 0.111 | 10.3 | -- | -- | -- | -- |
| 30.49 | 0.257 | 11 | -- | -- | -0.76 | -- | -- | -0.0258 | -- | 24.93 | 1470 | -- | -- |
| 39.52 | 0.293 | 11 | -- | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 5 | 23.88 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 7 | 23.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 31 | 24.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 80 | 24.39 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 82 | 24.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 95 | 24.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 123 | 24.52 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 130 | 24.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 207 | 24.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 262 | 24.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 291 | 24.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 294 | 24.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 327 | 24.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 358 | 24.83 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 424 | 24.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 488 | 24.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 516 | 24.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 541 | 24.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 543 | 24.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 566 | 24.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 579 | 25.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 603 | 25.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 607 | 25.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 640 | 25.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 710 | 25.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 873 | 25.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |