BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0246300 Os02g0246300|009-136-E10
         (134 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29990.1  | chr1:10507666-10508821 FORWARD LENGTH=130          162   6e-41

>AT1G29990.1 | chr1:10507666-10508821 FORWARD LENGTH=130
          Length = 129

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 98/119 (82%)

Query: 14  VREMQRDLESQANALSKIQKDISKNHQVRKQYTIQVGXXXXXXXXXXXXXDEANVYKLIG 73
           VR++QRDLE++AN L KIQKDI KNHQ+RK+YTIQ+G             ++ANVYKLIG
Sbjct: 6   VRDLQRDLENKANDLGKIQKDIGKNHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIG 65

Query: 74  PVLVKQDLAEAKANVKKRIEYISAELKRMDRALKDLEEKQNSKKESIFKLQQKMQAVQA 132
           PVLVKQDLAEA ANV+KRIEYISAELKR+D  L+D+EEKQN+K+E+I KLQQ++Q +QA
Sbjct: 66  PVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRLQTIQA 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.125    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,696,387
Number of extensions: 49515
Number of successful extensions: 474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)