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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0232100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0243) R2 : 0.0316
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0513) R2dN8 : 0.0408 R2N8 : 0.0316
σ : 0.458
deviance : 96.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.19 0.439 3.34 -0.0736 0.296 -0.618 -0.405 2.43 0.201 7.51 50.34 7 -- --
89.64 0.441 3.33 -0.0895 0.3 -0.261 -0.486 -- 0.195 7.61 52.62 6 -- --
87.6 0.436 3.34 -0.0813 0.295 -0.628 -- 2.52 0.203 7.84 50.48 6 -- --
90.13 0.442 3.33 -0.103 0.302 -0.295 -- -- 0.199 7.66 52.63 16 -- --
92.3 0.447 3.35 -0.0767 -- -0.621 -- 2.55 0.207 -- 50.4 6 -- --
90.73 0.447 3.34 -0.0876 0.295 -- -0.504 -- 0.183 7.94 -- -- -- --
91.46 0.448 3.34 -0.101 0.294 -- -- -- 0.183 8.15 -- -- -- --
95.03 0.454 3.34 -0.0993 -- -0.271 -- -- 0.202 -- 52.65 16 -- --
90.41 0.443 3.33 -- 0.301 -0.293 -- -- 0.21 7.69 52.44 16 -- --
96.24 0.458 3.34 -0.0982 -- -- -- -- 0.187 -- -- -- -- --
91.73 0.448 3.33 -- 0.294 -- -- -- 0.195 8.18 -- -- -- --
95.29 0.455 3.34 -- -- -0.271 -- -- 0.213 -- 52.47 16 -- --
96.49 0.458 3.34 -- -- -- -- -- 0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.52 radiation 1.0 43200 < th dose dependent rect. 3 1
2 81.89 humidity 50.0 10 > th dose independent rect. 3 23
3 82.48 temperature 20.0 30 > th dose dependent rect. 2 1
4 82.52 atmosphere 1000.0 30 > th dose independent rect. 2 1
5 82.52 atmosphere 1000.0 30 > th dose dependent rect. 2 1
9 82.56 temperature 20.0 30 > th dose independent rect. 2 1
12 82.59 wind 5.0 30 < th dose independent rect. 2 1
14 82.60 humidity 80.0 30 > th dose independent rect. 2 1
15 82.60 wind 7.0 30 < th dose dependent rect. 2 1
17 82.60 humidity 70.0 30 > th dose dependent rect. 2 1
20 82.61 humidity 50.0 30 > th dose dependent rect. 2 1
25 82.63 temperature 10.0 30 > th dose independent rect. 2 1
27 82.63 temperature 30.0 30 < th dose independent rect. 2 1
28 82.63 humidity 50.0 30 > th dose independent rect. 2 1
32 82.63 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 82.63 radiation 1.0 30 < th dose independent rect. 2 1
39 82.63 precipitation 0.1 30 < th dose independent rect. 2 1
40 82.63 temperature 10.0 30 > th dose independent rect. 3 23
41 82.63 radiation 1.0 30 < th dose dependent rect. 2 1
46 82.63 precipitation 0.1 30 < th dose dependent rect. 2 1
52 82.80 radiation 1.0 4320 < th dose dependent rect. 3 1
56 82.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
63 82.88 wind 9.0 1440 < th dose independent rect. 3 1
64 82.88 temperature 10.0 1440 > th dose independent rect. 3 1
67 82.88 temperature 30.0 1440 < th dose independent rect. 3 1
71 82.88 humidity 50.0 1440 > th dose independent rect. 3 1
80 82.88 atmosphere 995.0 1440 > th dose independent rect. 3 1
81 82.88 radiation 1.0 1440 < th dose independent rect. 3 1
101 82.88 temperature 10.0 1440 > th dose independent rect. 4 23
111 82.90 temperature 30.0 30 < th dose dependent rect. 2 1
113 82.99 wind 1.0 30 > th dose independent rect. 2 1
167 83.78 atmosphere 995.0 30 > th dose independent rect. 3 23
170 83.91 precipitation 0.1 30 < th dose independent rect. 3 23
171 83.91 precipitation 0.1 30 < th dose dependent rect. 3 23
182 84.75 humidity 70.0 4320 > th dose independent rect. 21 9
186 84.86 humidity 70.0 4320 > th dose independent rect. 22 5
191 85.07 humidity 70.0 4320 > th dose independent rect. 21 1
192 85.09 wind 9.0 30 < th dose independent rect. 3 23
207 85.27 humidity 50.0 4320 > th dose independent rect. 16 1
221 85.99 radiation 1.0 720 < th dose independent rect. 8 1
223 85.99 radiation 1.0 720 < th dose dependent rect. 8 1
225 86.07 humidity 80.0 4320 > th dose independent rect. 3 5
228 86.14 humidity 90.0 4320 < th dose dependent rect. 4 4
230 86.15 humidity 70.0 4320 < th dose independent rect. 20 11
232 86.16 temperature 10.0 30 > th dose dependent rect. 3 23
235 86.22 humidity 70.0 4320 < th dose dependent rect. 20 11
242 86.38 humidity 80.0 4320 < th dose independent rect. 3 5
244 86.43 humidity 70.0 4320 < th dose independent rect. 20 1
256 86.43 humidity 70.0 4320 < th dose dependent rect. 20 1
267 86.45 humidity 50.0 10 > th dose independent sin 4 NA
279 86.56 humidity 50.0 30 > th dose independent sin 7 NA
289 86.62 radiation 40.0 30 < th dose dependent rect. 3 23
302 86.72 temperature 15.0 4320 > th dose independent rect. 24 2
303 86.72 wind 9.0 4320 > th dose dependent rect. 14 1
306 86.76 temperature 15.0 4320 < th dose independent rect. 24 1
315 86.84 radiation 40.0 30 < th dose independent rect. 3 23
317 86.87 temperature 15.0 4320 < th dose independent rect. 24 3
319 86.87 atmosphere 995.0 43200 < th dose dependent rect. 7 10
331 86.91 humidity 90.0 90 < th dose independent rect. 2 1
332 86.91 humidity 80.0 4320 < th dose independent rect. 4 2
342 86.91 wind 9.0 43200 > th dose dependent rect. 18 15
362 86.96 humidity 50.0 4320 > th dose dependent rect. 3 6
379 87.00 atmosphere 1010.0 10 > th dose dependent rect. 12 1
431 87.08 wind 7.0 43200 > th dose dependent rect. 6 1
451 87.09 atmosphere 995.0 43200 > th dose independent rect. 7 6
496 87.15 atmosphere 995.0 43200 < th dose dependent sin 23 NA
507 87.17 humidity 50.0 4320 > th dose dependent rect. 4 1
602 87.29 wind 9.0 43200 > th dose independent rect. 9 1
630 87.32 humidity 60.0 4320 > th dose independent rect. 18 1
675 87.38 wind 9.0 43200 > th dose dependent sin 9 NA
692 87.42 wind 9.0 43200 > th dose independent rect. 23 2
696 87.43 humidity 70.0 4320 < th dose independent rect. 20 13
697 87.43 wind 9.0 43200 > th dose dependent rect. 23 2
702 87.44 atmosphere 995.0 43200 < th dose independent rect. 7 1
714 87.44 wind 9.0 43200 > th dose dependent rect. 8 1
715 87.44 atmosphere 995.0 43200 < th dose dependent rect. 7 1
724 87.44 wind 7.0 43200 > th dose dependent rect. 6 4
741 87.46 humidity 90.0 43200 > th dose independent rect. 5 1
755 87.48 wind 7.0 43200 > th dose independent rect. 6 1
756 87.48 humidity 60.0 4320 < th dose independent rect. 18 1
764 87.49 temperature 20.0 720 > th dose independent rect. 3 1
767 87.49 wind 9.0 43200 > th dose independent rect. 18 16
768 87.49 radiation 10.0 30 < th dose independent rect. 3 23
770 87.50 humidity 60.0 270 < th dose independent rect. 10 1
773 87.50 atmosphere 995.0 43200 < th dose independent rect. 7 8
775 87.50 temperature 15.0 4320 < th dose dependent rect. 1 1
776 87.50 atmosphere 995.0 43200 < th dose dependent rect. 13 2
777 87.51 atmosphere 1015.0 43200 < th dose independent rect. 19 1
797 87.53 temperature 15.0 4320 > th dose independent rect. 12 15
799 87.53 radiation 40.0 4320 > th dose dependent rect. 7 2
819 87.53 wind 9.0 43200 > th dose dependent rect. 18 21
838 87.55 humidity 50.0 30 > th dose dependent rect. 3 23
839 87.56 radiation 1.0 14400 < th dose independent rect. 10 2
842 87.56 radiation 1.0 14400 < th dose dependent rect. 10 2
843 87.57 humidity 50.0 4320 < th dose independent rect. 16 1
853 87.58 atmosphere 995.0 43200 > th dose independent rect. 9 1
856 87.58 atmosphere 1010.0 30 > th dose dependent sin 23 NA
865 87.59 wind 9.0 43200 < th dose independent rect. 23 2
907 87.61 wind 9.0 43200 > th dose dependent rect. 22 12
923 87.63 wind 7.0 43200 < th dose independent rect. 6 1
930 87.63 temperature 15.0 4320 > th dose independent rect. 24 13
956 87.63 wind 9.0 43200 > th dose dependent rect. 6 9