BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0232100 Os02g0232100|AK100854
         (303 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53490.1  | chr1:19965146-19966811 FORWARD LENGTH=305          428   e-120

>AT1G53490.1 | chr1:19965146-19966811 FORWARD LENGTH=305
          Length = 304

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/309 (67%), Positives = 252/309 (81%), Gaps = 12/309 (3%)

Query: 1   MKCNACWRELEGQAVSTTCGHLLCTEDAKKILSNDAACPICDQVLSKSHMRPVDTNPNDD 60
           M+CNACWR+LEG+A+STTCGHLLCTEDA KILSND ACPICDQVLSKS M+PVD NPN++
Sbjct: 1   MRCNACWRDLEGRAISTTCGHLLCTEDASKILSNDGACPICDQVLSKSLMKPVDINPNEE 60

Query: 61  WTNMSMAGVSPQILMKSAYRSVMFYIGQKELEMQYKMNRIVGQCRQKCELMQAKFTEKLE 120
           W NM+MAG+SPQILMKSAYRSVMFYI Q++LEMQYKMNR+V QCRQKCE MQAKF+EK+E
Sbjct: 61  WINMAMAGISPQILMKSAYRSVMFYIAQRDLEMQYKMNRVVAQCRQKCEGMQAKFSEKME 120

Query: 121 EVHTAYQKMAKKCQLMEQEVENLSRDKQELQEKFAEKSRQKRKLDEMYDQLRSEYESAKR 180
           +VHTAYQKM K+CQ+MEQEVENL++DKQELQEKF+EKSRQKRKLDEMYDQLRSEYES KR
Sbjct: 121 QVHTAYQKMGKRCQMMEQEVENLTKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESVKR 180

Query: 181 SAIQPANNYFPRAQ-PDLFSG-VPNIMDSSDPLRQGLAGL-PETPGRRDEGWAPPPRQRR 237
           +AIQPANN++PR Q PD FS    N+M++ + +R+  +   P TPG +DE W  P RQ  
Sbjct: 181 TAIQPANNFYPRHQEPDFFSNPAVNMMENRETIRKDRSFFSPATPGPKDEIW--PARQNS 238

Query: 238 STSGPFELSAGSPAHNAAPPVDIRPRQPAR--PVFGTAMN-NTSAALRNMIISPVKRPQL 294
           S SGPF++S  SP    A P D+  R+  R  PV+G     N  + LRN+I+SP+KR QL
Sbjct: 239 SNSGPFDISTDSP----AIPSDLGNRRAGRGHPVYGGGGTANPQSTLRNLILSPIKRSQL 294

Query: 295 SRNRPHMFT 303
           SR+RP +FT
Sbjct: 295 SRSRPQLFT 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,651,852
Number of extensions: 285922
Number of successful extensions: 1993
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1994
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)