Os02g0225300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0225300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.97 | 0.199 | 12.2 | 0.162 | 0.208 | -0.49 | 0.19 | -0.987 | -0.0488 | 1.05 | 27.38 | 27 | -- | -- |
| 19.07 | 0.205 | 12.2 | -0.0061 | 0.213 | -0.543 | -0.129 | -- | -0.0664 | 1.38 | 42.13 | 51 | -- | -- |
| 18.05 | 0.198 | 12.2 | 0.165 | 0.194 | -0.491 | -- | -0.954 | -0.0474 | 0.902 | 26.11 | 31 | -- | -- |
| 19.1 | 0.204 | 12.2 | -0.00604 | 0.213 | -0.556 | -- | -- | -0.068 | 1.41 | 37.21 | 21 | -- | -- |
| 19.13 | 0.204 | 12.2 | 0.173 | -- | -0.421 | -- | -0.934 | -0.0296 | -- | 25.61 | 270 | -- | -- |
| 21.96 | 0.22 | 12.2 | 0.0964 | 0.068 | -- | -0.168 | -- | 0.00925 | 0.892 | -- | -- | -- | -- |
| 22.02 | 0.22 | 12.2 | 0.103 | 0.0753 | -- | -- | -- | 0.0108 | 23.1 | -- | -- | -- | -- |
| 20.03 | 0.208 | 12.2 | 0.000206 | -- | -0.385 | -- | -- | -0.049 | -- | 35.1 | 809 | -- | -- |
| 19.1 | 0.204 | 12.2 | -- | 0.212 | -0.553 | -- | -- | -0.0669 | 1.4 | 49.59 | 21 | -- | -- |
| 22.37 | 0.221 | 12.2 | 0.105 | -- | -- | -- | -- | 0.0114 | -- | -- | -- | -- | -- |
| 22.3 | 0.221 | 12.2 | -- | 0.0763 | -- | -- | -- | -0.000701 | 23.2 | -- | -- | -- | -- |
| 20.03 | 0.208 | 12.2 | -- | -- | -0.385 | -- | -- | -0.049 | -- | 35.2 | 809 | -- | -- |
| 22.67 | 0.222 | 12.2 | -- | -- | -- | -- | -- | -0.000245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 2 | 12.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 7 | 12.64 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 1 |
| 14 | 12.64 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 29 | 12.67 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 1 |
| 77 | 16.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 138 | 17.48 | atmosphere | 995 | 720 | < th | dose independent | rect. | 16 | 1 |
| 141 | 17.48 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 210 | 17.53 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 250 | 17.68 | atmosphere | 995 | 720 | < th | dose dependent | sin | 9 | NA |
| 257 | 17.73 | atmosphere | 995 | 720 | > th | dose independent | sin | 9 | NA |
| 259 | 17.76 | atmosphere | 995 | 720 | < th | dose independent | sin | 9 | NA |
| 270 | 17.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 282 | 18.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 289 | 18.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 290 | 18.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 2 |
| 297 | 18.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 299 | 18.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 14 | 22 |
| 303 | 18.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 310 | 18.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 321 | 18.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 330 | 18.19 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 352 | 18.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 355 | 18.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 357 | 18.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 358 | 18.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 369 | 18.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 391 | 18.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 396 | 18.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 424 | 18.29 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 447 | 18.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 448 | 18.31 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 508 | 18.35 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 511 | 18.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 540 | 18.38 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 589 | 18.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 660 | 18.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 726 | 18.50 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 728 | 18.51 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 789 | 18.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 790 | 18.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 825 | 18.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 838 | 18.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 2 |
| 850 | 18.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 877 | 18.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 922 | 18.62 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |