BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0225300 Os02g0225300|AK064695
         (160 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52980.1  | chr5:21482329-21483642 REVERSE LENGTH=223          141   2e-34

>AT5G52980.1 | chr5:21482329-21483642 REVERSE LENGTH=223
          Length = 222

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 88/116 (75%), Gaps = 2/116 (1%)

Query: 30  GADFLLSSPKPRDKSDELKARLDKLREMQERKEYAELVRDVAPPAKEDSPELFSSYKDQI 89
           G++F+ +SPKPR+KS+ELK RL KLRE+ ERKEYAELV+D+ P  + + P  FSSYKDQ+
Sbjct: 76  GSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDITPKKQVEEP--FSSYKDQL 133

Query: 90  GFGLHVVLIMFTGYLVGFVAFRALFNNSPVMNAAXXXXXXXXXXXXETVLFIIRSS 145
           GFGLHV L MFTGYLVG+ +FRALFN +P ++AA            ET+LFII++S
Sbjct: 134 GFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVETLLFIIKTS 189



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,597,876
Number of extensions: 94021
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)