Os02g0202600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0202600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.08 | 0.194 | 9.83 | -0.739 | 0.017 | -0.617 | -0.205 | 0.217 | -0.209 | 16 | 27.32 | 189 | -- | -- |
| 17.14 | 0.193 | 9.83 | -0.711 | 0.016 | -0.61 | -0.261 | -- | -0.2 | 16.1 | 27.21 | 178 | -- | -- |
| 17.12 | 0.193 | 9.83 | -0.751 | 0.0361 | -0.599 | -- | 0.359 | -0.216 | 12.8 | 27.43 | 196 | -- | -- |
| 17.29 | 0.194 | 9.83 | -0.702 | 0.0345 | -0.619 | -- | -- | -0.2 | 12.1 | 27.03 | 194 | -- | -- |
| 17.18 | 0.193 | 9.83 | -0.769 | -- | -0.621 | -- | 0.361 | -0.218 | -- | 27.54 | 183 | -- | -- |
| 22.62 | 0.223 | 9.8 | -0.538 | 0.184 | -- | -0.206 | -- | -0.0634 | 15.2 | -- | -- | -- | -- |
| 22.75 | 0.223 | 9.8 | -0.542 | 0.182 | -- | -- | -- | -0.0646 | 15 | -- | -- | -- | -- |
| 17.35 | 0.194 | 9.83 | -0.707 | -- | -0.637 | -- | -- | -0.204 | -- | 27.17 | 180 | -- | -- |
| 28.98 | 0.252 | 9.8 | -- | 0.113 | -0.307 | -- | -- | -0.0633 | 15.9 | 27.03 | 194 | -- | -- |
| 24.66 | 0.232 | 9.8 | -0.55 | -- | -- | -- | -- | -0.0694 | -- | -- | -- | -- | -- |
| 30.5 | 0.258 | 9.78 | -- | 0.193 | -- | -- | -- | -0.00427 | 15 | -- | -- | -- | -- |
| 29.41 | 0.253 | 9.8 | -- | -- | -0.402 | -- | -- | -0.0813 | -- | 27.6 | 148 | -- | -- |
| 32.64 | 0.267 | 9.78 | -- | -- | -- | -- | -- | -0.00838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 5 | 16.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 19 | 17.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 86 | 17.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 87 | 17.29 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 89 | 17.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 97 | 17.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 99 | 17.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 105 | 17.33 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 113 | 17.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 139 | 17.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 141 | 17.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 230 | 17.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 261 | 17.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 268 | 17.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 279 | 17.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 285 | 17.49 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 305 | 17.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 332 | 17.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 12 |
| 372 | 17.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 436 | 17.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 521 | 17.59 | temperature | 25 | 4320 | > th | dose independent | sin | 18 | NA |
| 574 | 17.61 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |
| 584 | 17.61 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 585 | 17.61 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 611 | 17.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 741 | 17.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 743 | 17.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 750 | 17.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 791 | 17.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 806 | 17.66 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 937 | 17.69 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 989 | 17.70 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 4 |