BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0202600 Os02g0202600|AK101844
         (285 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25570.1  | chr2:10885881-10887842 REVERSE LENGTH=289          372   e-103

>AT2G25570.1 | chr2:10885881-10887842 REVERSE LENGTH=289
          Length = 288

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 211/246 (85%), Gaps = 4/246 (1%)

Query: 28  HALNPQRWIHDRNKKAMELVAKGWSALQEVDRVIDYADRNDKRLIPLLRGAKENFELALE 87
           H    +R +H RN+KAME VAKGWSA++EV+RVIDY + ND+RLIPLLRGAKENFELALE
Sbjct: 26  HGFEQRRGLHSRNEKAMEYVAKGWSAIKEVERVIDYCELNDRRLIPLLRGAKENFELALE 85

Query: 88  IDNMNTHARLWLAKMHFKYHVPGACKAIGAALLVEAANMGDPDAQYELGCHLRIENDYVH 147
            DN+NTHAR WL+K+H KYHVPGACKA+GAALLVEAA+MG+ DAQYELGC LR+END+V 
Sbjct: 86  ADNLNTHARYWLSKLHLKYHVPGACKAVGAALLVEAADMGNADAQYELGCRLRVENDHVQ 145

Query: 148 SDQQAFYYIEKAVDQLHPGALYLLGAVYLTGDCVKRDIASAMWCFHRASEKGHSGAAIAY 207
           SDQQAF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGH+GAAIAY
Sbjct: 146 SDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAY 205

Query: 208 GSLLLKGAEVPEVITRFN-SGKSP--STGKMRKRPIQQDPVKLAKEQFQIAAEAGCDLGL 264
           GSLLL+G +VPE +T+ N  G SP     K  + P + +P+++AKEQFQIAA AGCDLGL
Sbjct: 206 GSLLLRGVQVPESLTKLNVVGVSPPKRARKNLENP-EMNPLEMAKEQFQIAARAGCDLGL 264

Query: 265 RWLKRL 270
           +WL+R+
Sbjct: 265 KWLQRV 270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,477,675
Number of extensions: 216915
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 188
Effective length of database: 8,447,217
Effective search space: 1588076796
Effective search space used: 1588076796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)