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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0198400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0138) R2 : 0.00131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0226 (0.0291) R2dN8 : 0.00169 R2N8 : 0.00131
σ : 0.261
deviance : 31.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.68 0.26 2.88 -0.0357 0.0979 -0.102 -0.448 0.368 0.016 1.12 9.29 87 -- --
30.88 0.259 2.88 -0.042 0.0983 -0.0972 -0.0754 -- 0.0121 1.32 7.96 86 -- --
30.89 0.259 2.88 -0.0382 0.0896 -0.0965 -- 0.0422 0.0175 1.21 9.29 86 -- --
30.9 0.259 2.88 -0.0387 0.0861 -0.0892 -- -- 0.0174 1.49 9.29 86 -- --
31.04 0.259 2.88 -0.0367 -- -0.0309 -- 0.0168 0.0192 -- 9.42 123 -- --
31.09 0.261 2.88 -0.0444 0.0169 -- -0.0935 -- 0.0168 5.37 -- -- -- --
31.1 0.261 2.88 -0.0442 0.0239 -- -- -- 0.0174 8.38 -- -- -- --
31.03 0.259 2.88 -0.0415 -- -0.0316 -- -- 0.0174 -- 9.627 91 -- --
30.94 0.259 2.88 -- 0.0856 -0.0895 -- -- 0.0192 1.61 9.29 86 -- --
31.13 0.261 2.88 -0.0441 -- -- -- -- 0.0177 -- -- -- -- --
31.15 0.261 2.88 -- 0.0238 -- -- -- 0.0223 8.51 -- -- -- --
31.08 0.26 2.88 -- -- -0.0314 -- -- 0.022 -- 9.56 77 -- --
31.18 0.261 2.88 -- -- -- -- -- 0.0226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.62 wind 9.0 1440 < th dose independent rect. 23 1
2 27.62 temperature 25.0 30 > th dose independent rect. 22 1
3 27.62 temperature 10.0 1440 > th dose independent rect. 23 1
6 27.62 temperature 30.0 1440 < th dose independent rect. 23 1
10 27.62 humidity 50.0 1440 > th dose independent rect. 23 1
20 27.62 atmosphere 995.0 1440 > th dose independent rect. 23 1
21 27.62 radiation 1.0 1440 < th dose independent rect. 23 1
41 27.62 temperature 10.0 1440 > th dose independent rect. 24 23
44 27.62 radiation 1.0 1440 < th dose dependent rect. 23 1
52 27.64 atmosphere 1005.0 30 > th dose dependent rect. 22 1
53 27.65 wind 3.0 30 < th dose independent rect. 22 1
54 27.65 temperature 20.0 30 > th dose dependent rect. 22 1
57 27.67 humidity 80.0 30 > th dose independent rect. 22 1
59 27.68 wind 5.0 30 < th dose dependent rect. 22 1
63 27.69 humidity 90.0 30 < th dose independent rect. 22 1
64 27.69 atmosphere 1000.0 30 > th dose independent rect. 22 1
73 27.72 temperature 10.0 30 > th dose independent rect. 22 1
75 27.72 temperature 30.0 30 < th dose independent rect. 22 1
76 27.72 humidity 50.0 30 > th dose independent rect. 22 1
80 27.72 atmosphere 1010.0 30 < th dose independent rect. 22 1
82 27.72 radiation 1.0 30 < th dose independent rect. 22 1
87 27.72 precipitation 0.1 30 < th dose independent rect. 22 1
88 27.72 temperature 10.0 30 > th dose independent rect. 23 23
89 27.72 humidity 50.0 30 > th dose dependent rect. 22 1
90 27.72 radiation 1.0 30 < th dose dependent rect. 22 1
96 27.72 precipitation 0.1 30 < th dose dependent rect. 22 1
97 27.73 wind 1.0 30 > th dose independent rect. 22 1
104 27.82 humidity 90.0 30 < th dose dependent rect. 22 1
106 27.83 atmosphere 1015.0 30 < th dose dependent rect. 22 1
108 27.87 wind 1.0 30 > th dose dependent rect. 22 1
113 27.91 temperature 30.0 30 < th dose dependent rect. 22 1
126 28.08 radiation 1.0 270 > th dose independent rect. 4 1
136 28.08 radiation 1.0 270 > th dose dependent rect. 4 1
176 28.18 atmosphere 995.0 30 > th dose independent rect. 23 23
180 28.22 wind 9.0 30 < th dose independent rect. 23 23
201 28.54 precipitation 0.1 30 < th dose independent rect. 23 23
202 28.54 precipitation 0.1 30 < th dose dependent rect. 23 23
221 28.87 precipitation 0.1 1440 < th dose independent rect. 23 1
222 28.87 precipitation 0.1 1440 < th dose dependent rect. 23 1
229 29.12 temperature 30.0 30 < th dose independent rect. 23 23
235 29.19 humidity 50.0 30 > th dose independent rect. 23 23
246 29.37 temperature 25.0 90 > th dose dependent rect. 21 8
249 29.39 radiation 10.0 30 < th dose dependent rect. 23 23
252 29.42 humidity 90.0 30 < th dose independent rect. 7 1
254 29.42 temperature 10.0 720 > th dose independent rect. 3 8
255 29.42 atmosphere 995.0 720 > th dose independent rect. 3 8
256 29.42 temperature 10.0 720 > th dose independent rect. 11 16
257 29.42 atmosphere 995.0 720 > th dose independent rect. 11 16
261 29.45 temperature 10.0 720 > th dose independent rect. 15 8
262 29.45 temperature 10.0 720 > th dose independent rect. 23 16
263 29.46 atmosphere 995.0 720 > th dose independent rect. 23 16
264 29.47 atmosphere 995.0 720 > th dose independent rect. 15 8
283 29.51 humidity 50.0 720 > th dose independent rect. 3 8
293 29.52 atmosphere 1005.0 30 > th dose independent rect. 7 1
295 29.52 wind 9.0 720 < th dose independent rect. 3 8
307 29.56 temperature 25.0 10 > th dose dependent rect. 22 7
318 29.62 wind 3.0 10 < th dose independent rect. 7 1
319 29.62 precipitation 0.1 720 < th dose independent rect. 15 8
320 29.62 precipitation 0.1 720 < th dose dependent rect. 15 8
321 29.63 wind 9.0 720 < th dose independent rect. 23 12
322 29.63 precipitation 0.1 720 < th dose independent rect. 11 12
323 29.63 precipitation 0.1 720 < th dose dependent rect. 11 12
325 29.64 precipitation 0.1 720 < th dose independent rect. 23 12
327 29.64 precipitation 0.1 720 < th dose dependent rect. 23 12
328 29.65 temperature 10.0 720 > th dose independent rect. 11 12
329 29.65 temperature 10.0 720 > th dose independent rect. 23 12
330 29.65 atmosphere 995.0 720 > th dose independent rect. 23 12
331 29.65 humidity 50.0 720 > th dose independent rect. 20 17
336 29.66 humidity 50.0 720 > th dose independent rect. 23 12
337 29.67 radiation 10.0 30 < th dose independent rect. 23 23
340 29.68 radiation 40.0 720 < th dose independent rect. 1 7
341 29.68 humidity 50.0 720 > th dose dependent rect. 23 2
343 29.69 temperature 10.0 720 > th dose independent rect. 13 7
344 29.69 atmosphere 1015.0 720 < th dose independent rect. 13 7
345 29.69 precipitation 0.1 720 < th dose independent rect. 11 16
346 29.69 temperature 10.0 720 > th dose independent rect. 20 17
347 29.69 atmosphere 995.0 720 > th dose independent rect. 20 17
350 29.69 precipitation 0.1 720 < th dose dependent rect. 11 16
357 29.71 atmosphere 995.0 720 > th dose independent rect. 11 12
360 29.72 wind 9.0 720 < th dose independent rect. 1 7
361 29.72 temperature 10.0 720 > th dose independent rect. 1 7
362 29.72 temperature 25.0 30 > th dose independent rect. 22 7
363 29.72 temperature 30.0 720 < th dose independent rect. 1 7
364 29.72 humidity 50.0 720 > th dose independent rect. 1 7
366 29.72 atmosphere 995.0 720 > th dose independent rect. 1 7
367 29.72 temperature 10.0 720 > th dose independent rect. 8 17
373 29.73 wind 1.0 720 > th dose independent rect. 11 12
388 29.76 wind 1.0 720 > th dose independent rect. 13 7
389 29.76 precipitation 0.1 720 < th dose independent rect. 3 8
393 29.76 precipitation 0.1 720 < th dose dependent rect. 3 8
411 29.79 wind 9.0 720 < th dose dependent rect. 23 2
414 29.80 wind 9.0 720 < th dose independent rect. 8 3
420 29.81 wind 9.0 720 < th dose independent rect. 20 3
422 29.81 precipitation 0.1 720 < th dose independent rect. 13 7
426 29.81 radiation 20.0 720 < th dose dependent rect. 23 7
427 29.81 precipitation 0.1 720 < th dose dependent rect. 13 7
429 29.82 precipitation 0.1 720 < th dose independent rect. 8 3
430 29.82 atmosphere 995.0 720 > th dose independent rect. 13 7
432 29.82 precipitation 0.1 720 < th dose dependent rect. 8 3
448 29.83 temperature 10.0 720 > th dose independent rect. 8 3
449 29.83 temperature 10.0 720 > th dose independent rect. 20 3
450 29.83 temperature 30.0 720 < th dose independent rect. 20 3
451 29.83 humidity 50.0 720 > th dose independent rect. 20 3
454 29.83 atmosphere 995.0 720 > th dose independent rect. 8 3
456 29.83 atmosphere 995.0 720 > th dose independent rect. 20 3
457 29.83 atmosphere 1015.0 720 < th dose independent rect. 8 3
458 29.83 radiation 1.0 720 < th dose independent rect. 20 3
465 29.83 humidity 80.0 720 > th dose independent rect. 23 6
467 29.83 temperature 10.0 720 > th dose independent rect. 11 21
468 29.83 temperature 10.0 720 > th dose independent rect. 23 21
477 29.83 radiation 1.0 720 < th dose dependent rect. 20 3
485 29.84 wind 1.0 720 > th dose independent rect. 20 3
486 29.84 precipitation 0.1 720 < th dose independent rect. 20 3
492 29.84 precipitation 0.1 720 < th dose dependent rect. 20 3
494 29.85 humidity 50.0 720 > th dose independent rect. 8 3
497 29.85 atmosphere 995.0 720 > th dose independent rect. 8 17
498 29.85 precipitation 0.1 720 < th dose independent rect. 8 17
506 29.85 precipitation 0.1 720 < th dose dependent rect. 8 17
508 29.86 precipitation 0.1 720 < th dose independent rect. 1 7
510 29.86 atmosphere 995.0 720 > th dose independent rect. 11 21
513 29.86 precipitation 0.1 720 < th dose dependent rect. 1 7
520 29.87 radiation 10.0 720 < th dose independent rect. 23 7
521 29.87 atmosphere 1015.0 720 < th dose independent rect. 11 12
522 29.87 precipitation 0.1 720 < th dose independent rect. 20 17
523 29.87 atmosphere 995.0 720 > th dose independent rect. 23 21
524 29.87 precipitation 0.1 720 < th dose independent rect. 23 21
528 29.87 precipitation 0.1 720 < th dose dependent rect. 20 17
529 29.87 precipitation 0.1 720 < th dose dependent rect. 23 21
532 29.88 precipitation 0.1 720 < th dose independent rect. 11 21
535 29.88 temperature 10.0 30 > th dose dependent rect. 22 10
536 29.88 precipitation 0.1 720 < th dose dependent rect. 11 21
537 29.89 wind 3.0 720 < th dose independent rect. 23 2
538 29.89 atmosphere 1015.0 30 < th dose independent rect. 23 23
549 29.91 humidity 80.0 10 > th dose independent rect. 8 1
552 29.91 precipitation 0.1 720 < th dose independent rect. 23 16
556 29.91 precipitation 0.1 720 < th dose dependent rect. 23 16
557 29.92 wind 1.0 270 < th dose independent rect. 5 2
570 29.94 precipitation 0.1 720 < th dose independent rect. 11 7
572 29.94 humidity 50.0 720 > th dose independent rect. 23 16
576 29.94 precipitation 0.1 720 < th dose dependent rect. 11 7
578 29.95 radiation 1.0 720 > th dose independent rect. 8 3
581 29.96 temperature 25.0 10 < th dose independent rect. 7 1
592 29.96 temperature 10.0 720 > th dose independent rect. 11 7
593 29.96 atmosphere 1000.0 720 > th dose independent rect. 23 7
594 29.96 atmosphere 1015.0 720 < th dose independent rect. 11 7
595 29.96 temperature 10.0 720 > th dose independent rect. 18 17
596 29.96 atmosphere 995.0 720 > th dose independent rect. 18 17
604 29.97 atmosphere 995.0 720 > th dose independent rect. 11 7
605 29.97 precipitation 0.1 720 < th dose independent rect. 23 7
606 29.97 wind 9.0 720 < th dose independent rect. 20 17
608 29.97 precipitation 0.1 720 < th dose dependent rect. 23 7
613 29.98 wind 9.0 720 < th dose independent rect. 23 7
614 29.98 temperature 10.0 720 > th dose independent rect. 23 7
615 29.98 temperature 30.0 720 < th dose independent rect. 23 7
616 29.98 humidity 50.0 720 > th dose independent rect. 23 7
623 29.98 wind 9.0 720 < th dose independent rect. 18 17
624 29.98 temperature 10.0 720 > th dose independent rect. 6 17
629 29.99 atmosphere 995.0 720 > th dose independent rect. 6 17
641 30.00 atmosphere 1015.0 720 < th dose independent rect. 3 8
642 30.00 temperature 30.0 720 < th dose independent rect. 23 12
643 30.00 precipitation 0.1 720 < th dose independent rect. 18 17
647 30.00 precipitation 0.1 720 < th dose dependent rect. 18 17
648 30.01 humidity 50.0 720 > th dose independent rect. 11 2
655 30.01 wind 1.0 90 > th dose independent rect. 8 13
656 30.01 humidity 50.0 720 > th dose independent rect. 18 17
663 30.02 wind 1.0 720 > th dose independent rect. 8 3
664 30.02 atmosphere 1015.0 720 < th dose independent rect. 20 3
680 30.02 atmosphere 1000.0 30 > th dose dependent rect. 7 1
682 30.03 temperature 10.0 720 > th dose independent rect. 11 2
683 30.03 atmosphere 995.0 720 > th dose independent rect. 11 2
684 30.03 atmosphere 1015.0 720 < th dose independent rect. 11 2
685 30.03 precipitation 0.1 720 < th dose independent rect. 11 2
688 30.03 atmosphere 1000.0 30 > th dose independent rect. 8 14
690 30.03 temperature 10.0 720 > th dose independent rect. 13 22
691 30.03 precipitation 0.1 720 < th dose dependent rect. 11 2
696 30.04 wind 1.0 720 > th dose independent rect. 11 2
698 30.04 wind 1.0 720 > th dose independent rect. 15 8
699 30.04 humidity 90.0 10 < th dose independent rect. 22 10
700 30.04 precipitation 0.1 90 < th dose independent rect. 21 11
704 30.04 precipitation 0.1 90 < th dose dependent rect. 21 11
722 30.05 wind 9.0 90 < th dose independent rect. 21 11
723 30.05 temperature 10.0 90 > th dose independent rect. 21 11
724 30.05 temperature 30.0 90 < th dose independent rect. 21 11
725 30.05 humidity 50.0 90 > th dose independent rect. 21 11
727 30.05 atmosphere 995.0 90 > th dose independent rect. 21 11
728 30.05 radiation 30.0 90 < th dose independent rect. 21 11
730 30.05 wind 9.0 720 < th dose independent rect. 11 12
731 30.05 temperature 10.0 90 > th dose independent rect. 8 13
732 30.05 atmosphere 1015.0 90 < th dose independent rect. 8 13
733 30.05 precipitation 0.1 90 < th dose independent rect. 8 13
745 30.05 precipitation 0.1 90 < th dose dependent rect. 8 13
755 30.07 radiation 1.0 720 > th dose independent rect. 11 2
757 30.07 wind 1.0 90 > th dose independent rect. 21 11
760 30.07 wind 9.0 90 < th dose independent rect. 8 13
766 30.08 precipitation 0.1 720 < th dose independent rect. 6 17
772 30.08 temperature 25.0 270 > th dose dependent rect. 19 7
777 30.08 precipitation 0.1 720 < th dose dependent rect. 6 17
778 30.08 wind 9.0 30 < th dose dependent rect. 23 23
785 30.09 wind 5.0 10 < th dose dependent rect. 7 1
790 30.10 temperature 20.0 30 > th dose independent rect. 7 1
794 30.10 wind 1.0 720 > th dose independent rect. 11 6
797 30.10 atmosphere 1015.0 30 < th dose independent rect. 22 10
798 30.10 wind 9.0 720 < th dose independent rect. 23 21
800 30.11 wind 9.0 720 < th dose independent rect. 11 2
802 30.11 temperature 30.0 720 < th dose independent rect. 8 3
811 30.11 humidity 50.0 720 > th dose dependent rect. 23 6
821 30.12 temperature 10.0 720 > th dose dependent rect. 11 2
837 30.13 temperature 10.0 1440 > th dose independent rect. 23 10
840 30.13 humidity 50.0 1440 > th dose independent rect. 23 10
842 30.13 atmosphere 995.0 1440 > th dose independent rect. 23 10
846 30.13 temperature 10.0 1440 > th dose independent rect. 9 14
900 30.15 humidity 80.0 30 > th dose independent rect. 22 11
902 30.15 temperature 30.0 10 < th dose independent rect. 8 14
926 30.16 temperature 30.0 720 < th dose independent rect. 3 8
951 30.17 radiation 1.0 30 > th dose independent rect. 7 1
971 30.17 precipitation 0.1 720 < th dose independent rect. 1 22
977 30.17 precipitation 0.1 720 < th dose dependent rect. 1 22
987 30.18 wind 9.0 720 < th dose independent rect. 11 21
989 30.18 precipitation 0.1 720 < th dose independent rect. 13 22
990 30.18 temperature 30.0 10 < th dose independent rect. 8 23