Os02g0195000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0195000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.41 | 0.306 | 9.31 | -0.98 | 0.664 | -0.932 | -1.53 | -0.999 | -0.296 | 24 | 23.76 | 859 | -- | -- |
| 43.61 | 0.308 | 9.32 | -1.09 | 0.679 | -0.77 | -1.32 | -- | -0.314 | 23.9 | 24.04 | 849 | -- | -- |
| 51.27 | 0.333 | 9.32 | -1.07 | 0.679 | -0.835 | -- | -0.0155 | -0.311 | 23.9 | 23.44 | 857 | -- | -- |
| 51.27 | 0.333 | 9.32 | -1.07 | 0.677 | -0.836 | -- | -- | -0.314 | 23.9 | 23.5 | 858 | -- | -- |
| 76.55 | 0.408 | 9.32 | -1.1 | -- | -1.13 | -- | -0.237 | -0.366 | -- | 26.4 | 856 | -- | -- |
| 52.21 | 0.339 | 9.3 | -0.902 | 0.765 | -- | -1.38 | -- | -0.176 | 23.9 | -- | -- | -- | -- |
| 60.45 | 0.364 | 9.29 | -0.847 | 0.771 | -- | -- | -- | -0.169 | 23.8 | -- | -- | -- | -- |
| 76.43 | 0.407 | 9.33 | -1.16 | -- | -1.14 | -- | -- | -0.415 | -- | 26.55 | 854 | -- | -- |
| 77.8 | 0.411 | 9.29 | -- | 0.717 | -0.337 | -- | -- | -0.14 | 23.9 | 23.9 | 699 | -- | -- |
| 97.84 | 0.462 | 9.28 | -0.824 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 79.35 | 0.417 | 9.27 | -- | 0.761 | -- | -- | -- | -0.0748 | 23.7 | -- | -- | -- | -- |
| 107.47 | 0.483 | 9.28 | -- | -- | -0.664 | -- | -- | -0.195 | -- | 26.46 | 827 | -- | -- |
| 115.75 | 0.502 | 9.26 | -- | -- | -- | -- | -- | -0.0679 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 3 | 40.03 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 31 | 40.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 64 | 41.00 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 71 | 41.10 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 7 |
| 124 | 41.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 139 | 41.73 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 166 | 41.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 193 | 42.10 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 200 | 42.13 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 274 | 42.48 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 283 | 42.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 314 | 42.67 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 13 |
| 330 | 42.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 352 | 42.80 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 355 | 42.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 372 | 42.85 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 375 | 42.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 7 |
| 376 | 42.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 11 |
| 383 | 42.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 398 | 42.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 400 | 42.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 402 | 42.94 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 12 |
| 406 | 42.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 440 | 43.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 447 | 43.04 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 449 | 43.04 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 7 |
| 454 | 43.05 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 479 | 43.12 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 486 | 43.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 493 | 43.16 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 556 | 43.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 578 | 43.33 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 21 |
| 600 | 43.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 637 | 43.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 22 |
| 654 | 43.47 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 662 | 43.48 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 665 | 43.49 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 676 | 43.51 | temperature | 20 | 720 | < th | dose independent | sin | 3 | NA |
| 678 | 43.51 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 723 | 43.56 | wind | 3 | 14400 | < th | dose dependent | sin | 2 | NA |
| 741 | 43.58 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 760 | 43.61 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 777 | 43.63 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 784 | 43.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 829 | 43.69 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 832 | 43.69 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 843 | 43.70 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 19 |
| 863 | 43.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 865 | 43.73 | wind | 3 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 903 | 43.76 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 907 | 43.77 | wind | 3 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 926 | 43.78 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 20 |
| 953 | 43.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 963 | 43.81 | wind | 1 | 14400 | > th | dose independent | sin | 0 | NA |