BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0195000 Os02g0195000|AK109481
         (366 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12150.1  | chr3:3876688-3878621 REVERSE LENGTH=364            530   e-151

>AT3G12150.1 | chr3:3876688-3878621 REVERSE LENGTH=364
          Length = 363

 Score =  530 bits (1366), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/367 (69%), Positives = 312/367 (85%), Gaps = 14/367 (3%)

Query: 1   MVSVNLGLVHYVLDHIYGTVLHRTKLGTPFFSKGWGGTKLDLLEKMVKQLFP-EARCQNW 59
           MV+  LG++HYV+DHIYG  +HRTK+  PFFS+GWGG  L+LLE+MV++LFP E + QNW
Sbjct: 4   MVTTKLGMLHYVIDHIYGAFMHRTKMTPPFFSRGWGGPNLELLERMVQRLFPLEVQGQNW 63

Query: 60  PPTAVQPMWKTVWETKSSCLREGVFRTTCDPRLIEALPPESHNARVAFLTPKSVSPEKMA 119
           PP  V+P+W+TVWETK++ LREGVF+T C   L  ALPPES  ARVA+L PK+V P+KMA
Sbjct: 64  PPPLVRPVWRTVWETKTATLREGVFQTPCADELTAALPPESRTARVAWLVPKNVPPQKMA 123

Query: 120 CVIHLAGTGDHSFERRLRLGGPLLKDNIATMVLESPYYGQRRPSMQHGSKLQCVSDLLLL 179
           CV+HLAGTGDH+++RRLRLGGPL+K NIATMVLESP+YGQRRP +Q G++L CVSDLLLL
Sbjct: 124 CVVHLAGTGDHTYDRRLRLGGPLVKQNIATMVLESPFYGQRRPFLQCGARLLCVSDLLLL 183

Query: 180 GKATIDEARSLLYWLQNEAGYGKMGICGLSMGGVHAAMVGSLHPTPIATLPFLAPHSAVV 239
           G+ATI+E+RSL++WL  E G+GKMG+CGLSMGGVHA+MVGSLHPTP+ATLPFL+PHSAVV
Sbjct: 184 GRATIEESRSLIHWLDTEEGFGKMGVCGLSMGGVHASMVGSLHPTPVATLPFLSPHSAVV 243

Query: 240 PFCDGLYRHATAWDALRKDAATLAQDVTSLTEDMAQKSGITIEQVRERLRSVLSLTDVTR 299
            FC+G+ ++ TAW+ALR++ A             AQK  +T+++VRER+R+VLSLTDVTR
Sbjct: 244 AFCEGILKYGTAWEALREELA-------------AQKITMTLDEVRERMRNVLSLTDVTR 290

Query: 300 FPVPKNPQAVIFVGATDDGYIPKHSIMELQKAWPGSEVRWVTGGHVSSFFLHNDAFRKAI 359
           FP+PKNP AVIFV ATDDGYIPKHS++ELQKAWPGSEVRWVTGGHVSSF LHND FR+AI
Sbjct: 291 FPIPKNPDAVIFVAATDDGYIPKHSVLELQKAWPGSEVRWVTGGHVSSFILHNDEFRRAI 350

Query: 360 VDALDRL 366
           VD LDRL
Sbjct: 351 VDGLDRL 357



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,347,365
Number of extensions: 350354
Number of successful extensions: 703
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)